Lycium barbarum (goji berry): 132605818
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Entry
132605818 CDS
T09483
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132605818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132605818
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132605818
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
132605818
mRNA degradation factors
3'-5' decay
Ski complex
132605818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
Ski2_N
DEXQc_Suv3
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
132605818
NCBI-ProteinID:
XP_060175053
LinkDB
All DBs
Position
8:6447337..6489482
Genome browser
AA seq
1359 aa
AA seq
DB search
MDRIVVGKELSYRIGFTGHSGHLTIEPLPPVQRDTPLNQIPDFILPPAFPKETPETIKEY
IRENYLLPQLDADEFSPEKVGRQWEFDWFERAKILPDPSLPRSVVVPTWEVPFRRQRDRL
DNGRWEPKSEERDVSELTVGAEDSGALPRIVGPPKDFVRGSINSRPFRPGGLDDSPSLGR
VFPDGATNGEWVMEVLNGGYAQTAPPSFKQGPDLGDLKTHSFSWDVYEDQSAVTNTEEVK
LSGLSVQFDDLFKKAWQEDVTEFVGDGHKSELQSEAEQLTSVQPEPLQVEAEVNKSEVAV
EGLDTERAVLDEILSVEAEGSISRLVGDNDSARQNEGWAVTGGSEVIVERFHDLIPDMAL
MFPFELDPFQKEAIYHLEKGNSVFVAAHTSAGKTVVAEYAFALAAKHCTRAVYTAPIKTI
SNQKYRDFCGKFDVGLLTGDISLRPEASCLIMTTEILRSMLYRGADMIRDIEWVIFDEVH
YVNDVERGVVWEEVIIMLPRHINFVLLSATVPNTIEFADWIGRTKQKPIHVTGTTKRPVP
LEHCLFYSGEFYKVCENEEFLPHGFKAAKDVHKKKTASSASGGTSLRPGSSTAADKVRGQ
RRDSSSQAKQHKHSGPQKFGNFGAGWGTQSNVLGQNVMGLRRSEASLWLTLINKLLKKSL
LPVVIFCFSKNRCDKSADKIPGTDLTSSSEKSEIRIFCDKAFSRLKGSDRNLPQIVRIQS
LLHRGIGVHHAGLLPIVKEVVEMLFCRGLVKVLFSTETFAMGVNAPARTVVFDSVRKFDG
KEFRQLLPGEYTQMAGRAGRRGLDKNGTVVVMCRDEIPYESDLKNVIVGTATRLASQFRL
TYIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEQQQLLMRKLAQPTKSVECIKGEPAI
EDYFDMYSEAERYSQQIAEAVMQSQACQQYLTPGRAVVVKSQSVQDHLLGVVVKTPSSNN
RQYIVLVLTPELPSILETSSDASNRKDQKNSEFQILVPKSRRGYEDEYCSSVTSRKGSGV
VNIKLPHRGNAAGMNYEVRGVDNKDFLYICVKKIKIDQVRLLEDVSAGAYSNAIQQLLGL
KSEGNKYPPALDPVKDLKLKDVDLVEAYYKWNNLLQKMAQNKCHGCIKLDEHMKLARELK
RHREEVNALKFEMSDEALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELI
CTECLFENQLDDLEPEEAVAIMSSFVFQQKETSESFLTPKLSQAKKRLYETAIRLGELQA
QFKLPVDPQEYAQENLKFGLVEVVYEWAKGTPFAEICELTDVPEGVIVRTIVRLDETCRE
FRNAAAIMGNSALYKKMETASNMIKRDIVFAASLYITGV
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atggatcggatagtagtaggcaaagaactatcgtatagaatagggtttactggacacagt
ggacaccttacgattgagcctcttccacctgttcaacgtgatactcctctcaatcagatt
cctgacttcattttgccacctgcatttccaaaggaaacacctgaaacaataaaggaatat
attagggagaattatctactgcctcagctggatgcagacgagttttctcccgaaaaagtt
ggaaggcagtgggagtttgattggtttgagagagctaaaatccttccagatccatctttg
cctcgatctgttgttgttccaacatgggaagtgccttttagacgtcagagggacagatta
gataacggtagatgggagccaaagtcagaggagagagatgtatcagaacttacagttgga
gctgaggattctggggctctaccgcgcattgttggaccaccgaaggattttgtcagagga
agtatcaacagtcgtccgtttcgacccggtggcttggatgattccccttcattgggcaga
gtttttcctgatggtgctacgaacggtgaatgggtaatggaggtgcttaatggcggttat
gcgcaaactgctccccctagctttaagcaaggacctgatcttggtgatcttaagacacat
tcattctcttgggatgtatatgaggatcagagtgctgtcacgaacaccgaggaggtaaaa
ctgagtgggttatccgtgcagtttgatgacttgtttaagaaagcttggcaagaggacgtg
acagagtttgttggagatggtcataagtcagaattgcaatctgaagcagaacaattgaca
tctgtccagccagagccacttcaggttgaagctgaagtaaacaagtccgaagtggctgtt
gagggtttagacactgagagagctgtcttggatgagattttatctgttgaagcagaagga
tcaatatcaagattggttggggataatgatagtgcacgtcaaaatgagggatgggctgtt
actggtggcagtgaagtaattgtagaacgatttcatgatctcattccagatatggctctt
atgttcccatttgaactcgacccctttcaaaaagaggccatctatcatcttgaaaagggg
aactctgtctttgttgctgctcatacatctgctgggaagactgttgtggcagaatatgca
tttgctttggcagctaaacactgtaccagggctgtatatacagctccaatcaaaacaatc
agcaatcagaaatacagggatttttgtgggaaatttgatgttggcctcctcacgggtgat
ataagcttgagacctgaggcctcttgtcttataatgaccactgagatattaaggtcaatg
ctttatagaggggctgatatgattcgggatatagaatgggttatatttgatgaagtgcat
tatgtcaatgatgttgaaagaggtgttgtttgggaagaagttatcattatgctcccaaga
catatcaactttgtcctcctttcagctacggtaccaaacacaattgaatttgcagactgg
attggtcgaacaaaacaaaaaccaattcatgtgactgggacgaccaaaagaccggtccct
ttggaacattgtctcttctattctggggagttttacaaagtgtgcgagaacgaagaattt
ctaccgcatggatttaaagcagccaaagatgtacataagaagaaaaccgcaagttctgcc
tctggtggcaccagcttgcgtcctgggtcttcaacagctgctgataaggttcgagggcag
aggcgtgatagctcttctcaggcgaagcagcacaagcattctggtccccaaaaattcggg
aattttggtgctggttggggaacgcaaagcaatgtccttggacagaacgttatggggtta
aggaggtcagaggcgtctttgtggttgacactgattaataaactcttgaagaaatcgctg
ctacctgtggttatattttgtttttcgaagaatcgatgtgacaaatcagctgataagatc
cctggtactgatctcacaagtagctctgagaaaagtgaaattaggatattctgtgataaa
gcattttcacggcttaagggatctgacagaaacttaccgcagattgtcagaattcaaagc
cttctccacagaggcattggtgtgcatcatgcagggctcctcccaattgtcaaggaagtt
gtagaaatgcttttttgccgaggtttggttaaggttctgttctcgacagagacatttgca
atgggagttaatgctccagccaggacggttgtttttgattctgtaagaaagtttgatggg
aaggaatttaggcagctacttcctggagagtacactcagatggctgggcgtgctggaagg
agaggacttgataaaaatggtacagttgtggtgatgtgccgagatgagatcccttacgaa
agtgatttgaagaatgtaatagttggtactgcaactaggcttgcatctcagtttcgactg
acctacatcatgattttgcatctacttcgggttgaagaactgaaggttgaggacatgctg
aaaagaagttttgctgaatttcatgctcagaagaaactacctgagcaacaacaactcttg
atgcgaaagcttgctcagccaacaaaatctgttgaatgcataaagggtgaaccagcaatt
gaggactactttgacatgtactcggaggcagaaagatatagccagcaaatagcggaggca
gtaatgcagtcgcaagcttgtcagcagtaccttactcctgggagagcagtggttgtaaaa
tcacaatcagttcaagatcacttactaggcgttgtggtgaagacaccttcctctaacaac
agacaatatatagttctagttctgactcccgaattgccttcaatcctagaaacttcgtca
gatgcaagcaacaggaaagaccaaaaaaattctgaatttcagatattagttcctaaatca
agacggggttatgaggatgagtattgttcatcagtcacctccaggaagggatctggcgtt
gtcaacatcaaattgcctcaccgcggtaatgctgccgggatgaattatgaggttcgagga
gttgataacaaggatttcttgtatatatgtgtgaaaaagattaagatcgaccaagttcgg
cttcttgaagatgttagtgctggggcctactctaacgcaatacaacagctgttgggtctg
aaatctgaaggaaataagtatcctccagccttagatccggttaaagatctgaagttgaaa
gacgtggatcttgtggaagcatactacaaatggaataatctcttgcaaaaaatggcacag
aataagtgtcatggttgtattaaattggacgagcacatgaagttagctagagaattaaag
cggcaccgagaggaagtgaatgctttgaagtttgaaatgtcagatgaggcacttcagcag
atgccagattttcagggtcggatagatgtgttaaaagaaattggctgtatagatgctgac
cttgtagttcaaatcaaaggccgtgttgcttgcgaaatgaattctggagaggaattgata
tgcacagaatgtttatttgagaatcaactagatgatctggaaccagaagaggcagtggcg
atcatgtcttcctttgtgtttcagcagaaggagacttctgaatcttttctcacgccaaag
ctttctcaggctaaaaagagattatatgaaactgcaataagacttggggagcttcaggct
cagtttaagctaccagttgatccacaggagtatgcccaagagaatcttaagttcggtttg
gttgaagttgtatacgaatgggcaaagggcactccatttgctgagatttgtgaactcacc
gatgtccctgaaggtgtaatagtgaggactattgtcagactggacgagacatgtcgtgaa
tttagaaatgctgcagcaattatgggtaactctgctctgtacaagaagatggaaactgcg
tctaatatgatcaagcgtgatattgtctttgcagctagtttgtatattactggggtttga
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