Lycium barbarum (goji berry): 132606587
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Entry
132606587 CDS
T09483
Name
(RefSeq) squalene synthase-like
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb00100
Steroid biosynthesis
lbb00909
Sesquiterpenoid and triterpenoid biosynthesis
lbb01100
Metabolic pathways
lbb01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
132606587
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
132606587
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
lbb01006
]
132606587
Enzymes [BR:
lbb01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
132606587
Prenyltransferases [BR:
lbb01006
]
Terpene biosynthesis
Squalene/phytoene synthase
132606587
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Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
PreP_C
Motif
Other DBs
NCBI-GeneID:
132606587
NCBI-ProteinID:
XP_060176147
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Position
8:107545118..107553602
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AA seq
411 aa
AA seq
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MGTLGAILRHPEDIYPLMKLKVAARYAEKQIPSQPHWAFCYIMLHKVSRSFSLVIQQLPV
ELRDAVCIFYLVLRALDTVEDDTSVATDVKVPILMSFHRHVYDREWHFSCGTKDYKVLMD
QFHHVSTAFLELGKYYKEAIEDITMRMGAGMAKFIYKEVETIDDYDEYCHYVAGLVGLGL
SRLFFVSGKEDSASDSLCNSMGLFLQKTNIIRDYLEDINEVPKCRMFWPRQIWNKYVNKL
EDLKYEENSVKAVQCLNEMVTNALAHVEDCLTYMSTLRDPALFRFCAIPQVMAIGTLAKC
YNNIEVFRGVVKMRRGLTAKVIDRTRTMADVYGAFFDFSCILKSKVEYKDPNAAKTLQRL
EVILRTCKDSGTLNKRKSYVIQSRPNYNSTVVVVLVVIVAILLAYLSGNRP
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggggactttaggtgcaattctaaggcatccagaggatatatatccattgatgaagctg
aaggtagcggcacgatatgccgaaaaacagatcccttcacagccacattgggctttttgt
tacatcatgcttcacaaggtctctcgtagtttttctcttgtcattcaacagcttcctgtt
gagcttcgcgacgccgtatgcattttttatttggttcttcgagcactagacaccgttgag
gacgatacaagtgtagccacagacgtaaaagtacctattttgatgtccttccatcgccat
gtttatgaccgtgaatggcatttttcatgcggtacaaaggactacaaggttcttatggat
cagttccatcatgtttcaactgcttttttggagctagggaaatattacaaggaggcaatt
gaggacattaccatgaggatgggtgcaggaatggcaaagtttatatacaaggaggtggaa
acaattgatgattatgatgaatattgtcactatgtagctgggctcgttggattaggctta
tcaagacttttctttgtctctgggaaagaagattcggcttcagattctctctgcaactcc
atgggtttatttcttcagaaaacaaatatcattagagattatctggaagacataaatgaa
gtacctaagtgtcgcatgttttggcctcgtcagatttggaataaatacgttaacaagctc
gaggacttgaagtatgaggaaaactctgtcaaggcagtgcaatgtctgaatgaaatggtc
actaatgctttggcacatgtagaagattgtttgacttacatgtccacactgcgggatcct
gctctctttcgattttgtgctattccacaggtcatggcaattgggacactggcaaagtgc
tacaacaacattgaagtcttcagaggagtagtaaaaatgagacgtggtctcactgctaaa
gttattgaccggaccaggaccatggcagatgtgtatggtgctttcttcgacttctcttgt
attctgaaatccaaggtggagtataaagatccaaatgcagcgaaaactttacagaggctt
gaagtaatcttgagaacttgcaaagactcgggaaccttgaacaaaaggaaatcttatgta
atccagagcagacctaattacaattcaactgtggttgttgtccttgttgtcatagtggct
atccttcttgcatacctatctggaaaccggccttag
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