Lycium barbarum (goji berry): 132606635
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Entry
132606635 CDS
T09483
Name
(RefSeq) E3 ubiquitin-protein ligase UPL3-like
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
132606635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lbb04121
]
132606635
Enzymes [BR:
lbb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
132606635
Ubiquitin system [BR:
lbb04121
]
Ubiquitin ligases (E3)
HECT type E3
132606635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
TPR_TRIP12_N
ARM_ARMC5
HEAT_2
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
132606635
NCBI-ProteinID:
XP_060176195
LinkDB
All DBs
Position
8:109291535..109304288
Genome browser
AA seq
1810 aa
AA seq
DB search
METRNRNKRTEATSSAPSSSVKRARLNSRAATSNSISMDPTNESSGSGSTTRTRRNNPEK
GKEKEPEIIRDNNDMDDDDDDDDDDDNESEGNVGILHHNLTSASSALQGLLRKLGAGLDD
LLPSSAMVSSSATSSLSNGRLKKVLSGLRADGEEGKQIEALTQLCVMLSIGTEDSLSSFS
VDCYVPVLVGLLNHGSNPDIMLLAARALTHLVDVLPSSCGAVVHYGAVSCFVARLLTIEY
MDLAEQSLQALKKISQEDPTACLRAGALMAVLSYLDFFSTGVQRVALATAANMCKKLPSD
AADLVMEAVPLLTNLLQYHDSKVLEHASICLTRIAEAFASSPEKLDELCNHGLVTQAASL
ISTSNSGGGQASLSTETYTGLIRLLSTCASGSPLGAKTLMILGISGILKDILSGSGLVAS
VSISPALSRPAEQIFEIMNLANELLPPLPQGTISLPVSTNLFTRGSLTRKSSASGSSKQE
DLNASSQEVSAREKLLNDQPELLQQFGTDLLPVLIQTYGSSVNTAARHKCLSVIGKLMYF
SNADMIQSLINVTNISSFLAGVLAWKDPQVLVPALQIAEILMEKLPVVFGKMFVREGVVH
AVDALMLSESHVSAPPQPSRAEKEKRNRRRSANSNTDATVVEDPRSPVPSTGSPPNSMEI
PTVNSSLRMAVSTCAKAFKDKYFPSDSEAAEAGVTDDVIRLKNLCMKLNSGIDEQIAKPK
GKSKTFGPQLGDISVSKEEYLAEVIAAMMGELSKGDGVSTFEFIGSGVVASLLNYFTYGY
FSKEKISDASVSRLRQHAIRRYKSFIAVALPAGVDGGSLVPITILVQKLQNALCSLERFP
VVLSQSSRSSTGNARLSSGLSVLSQPFKLRLCRAQGEKTLRDYSSNVLLIDPLASLAAIE
EFLWARVERPEAEQKAFASGGNSGSGTIPAGGSASSQSLAPPSSAPRHHSARSRSAVNSN
DSDGSSSKGKGKAVLKPAQKVGTGIRSRNPARMRAALEKALRGEKSDEGDSSSEDDEMDR
SLVELDDALVIEDDVSDEDDHDDVLRDDPLPGCMADEVHDVKLGDSSEDSPLAQTPTDSN
TNAGGGSRSKTAARGSDSIEFRSRNSYGSRGAMSFAAAAMAGLSSASGRGMRGARDRHGH
PLFGSGDPPKLIFSVGGKPLNRNLTLYQAIQRQLVLDDDDDERYGGNDSVSSDGSRVWSD
IYTITYQRADNQAERSMNGAGSSISKSPKTSSLTSSSSDPSLLRASLLDSILQGELPCDL
EKSNPTYSILYLLRVLEALNQLAPRLRFQSMIDDFSEGKISSLDELSTTGINIPSEEFVN
SKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALHRL
HQQQGAEGNGSTHERAVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEV
GTGLGPTLEFYTLLSHDLQKVGLGMWRCVHINNKLSGGDKDLVQAPLGLFPRPWSPHAGS
VDGGQFCKAIEYFRLLGRVMAKALQDGRLLDLPLSTAFYKLVLGQELDLYDIISFDAELG
KTLQELQALVSRKQYIESMEDQNLDKSYDMHFRGTPVEDLCLDFTLPGYPEYVLKAGDEN
VDLSNLEEYISLVVDATVKTGIRQQMEAFRSGFTQVFDYSALQIFSPSELDYLLCGRREL
WKPETLVDHIKFDHGYTSKSPPIIHLLEIMGEFTPEQQRAFCQFVTGAPRLPAGGLAALN
PKLTIVRKHSSSAGNAAHNSNAPSESADEDLPSVMTCANYLKLPPYSSKEIMSKKLLYAI
NEGRGSFDLS
NT seq
5433 nt
NT seq
+upstream
nt +downstream
nt
atggaaactcgtaaccgaaataaaagaacggaggccacgtcatcagcgccttcttcttct
gttaaacgcgctcgtctcaactcacgcgccgccacctcaaactcgatttcaatggacccc
actaatgaatcttccgggtcgggtagtacgacccgaacccgccgtaataatccagaaaag
ggtaaggaaaaagaacccgaaattattagggataataatgatatggatgatgatgatgat
gatgatgatgatgatgataatgaaagtgagggtaatgttggtattttacatcataattta
acttcagcaagtagcgcattacaaggtttgttaagaaaattaggtgctggtttggatgat
ttgttgcctagttcagctatggtgtcgtcgtcggccacgtcatcgttatcgaacgggcgg
ttaaagaaggttttatcgggtttaagagctgatggtgaagaagggaaacaaattgaagca
ttaacacagctttgtgttatgctttcgatcggaacggaggattcgttgagtagtttctca
gtggattgttatgtacctgtgcttgttggtttgcttaatcatgggagcaatcctgatatt
atgctgcttgctgctcgagcgttgacgcatttggttgatgttttgccctcttcttgtggt
gctgtcgtgcattatggagcggtttcgtgctttgtggcgcggttgctaacgattgagtac
atggatttagctgaacagtctctacaagctttaaagaagatatctcaggaagatccaact
gcttgtttgcgagcaggtgcactcatggctgtgctttcgtatctcgatttcttttccact
ggtgttcagagagtagcattagcaactgctgctaatatgtgcaagaagctgccttcggat
gctgccgaccttgtgatggaagctgttccactgttgacgaatcttcttcagtatcatgat
tcaaaggtattagaacatgcttctatctgcttgacccggattgctgaagcatttgcatca
tctccagagaagctagatgaactttgcaatcacggacttgtcacacaggctgcctccctc
atctcaaccagtaattctggaggtggtcaggcttcactcagcacggaaacttacacaggc
ttgatccggcttctgtctacgtgtgcgagtggctctccattaggagctaaaaccttgatg
atacttggtatcagtgggatcctcaaggacatcttatcaggttctggcctcgtggcctct
gtctctatttcacctgccttgagcagacctgcggagcagatttttgagattatgaatctg
gcaaatgaactacttcctccgctgcctcaaggaaccatctctcttccagttagcacaaat
ttgttcactaggggttctttgacgaggaaatcctctgctagtggttctagcaaacaggag
gatctgaatgcatcttctcaggaggtatcagctcgtgagaagctattgaatgatcaacct
gaacttttgcaacaatttggaacggatctccttcctgttctaatccagacatatggatcc
agtgtgaatactgcagcgcgccacaaatgcctctcagttattggaaaacttatgtatttc
agtaatgcagatatgattcagtctttaattaatgtcactaacatatcaagtttcttggct
ggggttttggcttggaaggatccccaagtattggtgcccgctcttcaaattgcagagatt
ctaatggaaaagctccccgtagtttttggcaagatgtttgtccgagaaggtgttgttcat
gctgtagatgccttgatgttgtcggagtctcatgtttctgctcctccccagccttctcgt
gctgagaaggagaaacgtaatcgacgccgtagcgctaattcgaatacagatgcaactgtt
gttgaagatcctagaagtccagttccaagtactggatctccgccaaattcgatggaaatt
ccgaccgtcaattctagccttcggatggcagtcagtacatgtgcaaaagctttcaaagat
aaatacttcccttcagattctgaggcagctgaagctggtgtcacagatgatgttatacga
ttgaagaatctctgcatgaagttaaattctggtattgatgaacaaatagctaaacctaaa
ggaaaatcaaaaacatttggtcctcagcttggggatatttctgttagtaaggaagaatac
ttggctgaagtgatagctgctatgatgggggagctcagcaaaggggacggtgtttcaact
tttgagttcattggaagcggagttgttgcttctttgctgaattattttacgtatggatac
ttttctaaggaaaaaatctcggatgctagtgtctctaggctccgacaacatgcaatcaga
agatacaagtcttttattgcagttgctcttcctgctggtgttgatggtggaagtttggtt
cccattactattctggtccaaaagcttcaaaatgctctatgttcgttggagcgttttcct
gttgtgctgagtcagagttccagatcatcgactggaaatgcacgtctttcttcaggttta
agtgttttgtctcagccatttaagctgcgcctttgcagagctcaaggagagaaaaccctc
cgtgactactcttcaaatgttttgttgattgatcctttggcaagtttagcagctattgaa
gaattcctctgggcccgagttgagcgacctgaggctgaacagaaggcctttgcctctggt
ggcaactctgggtcggggactatacctgcaggaggcagtgcatcatctcaatctctggca
cccccttcctccgcacctcgtcatcattctgcacgatctaggtcagcagttaatagtaat
gacagtgatggaagctcttcaaagggcaaaggaaaagcagttttgaagcctgctcaaaaa
gttggcacaggaattcgatcaagaaatcctgctagaatgagagctgccttggagaaggcc
ttaagaggagagaaatctgatgagggggactctagttcagaggatgacgagatggatcgt
tctcttgtggaacttgatgatgcattggtgattgaggatgatgtgtccgatgaagacgac
catgatgatgtgctgagggatgatcctcttcctggatgcatggcagatgaagtgcatgat
gttaaattgggagattcttcggaggatagtcctcttgcacagacaccaactgatagcaat
acaaatgctggtggtggttctaggagcaaaactgctgctcggggatctgattccattgag
ttcagaagtaggaattcctatggttcaaggggtgcaatgtcatttgctgctgctgccatg
gcgggtctttcatctgctagtggtagaggtatgaggggcgctagagatcggcatgggcat
cctctatttggctctggtgatccaccaaaactaatattttctgttggtggaaagccgctt
aataggaacttgactctctaccaggctatccagcggcagcttgttctagatgatgatgat
gacgagagatatggtggcaatgattccgtatccagtgacggaagcagggtttggagtgat
atttacactattacataccaaagggcagacaaccaagctgagaggtcgatgaatggggct
ggaagctcaatttccaagtcccccaaaaccagttctttgacaagttccagttctgatcct
tcattgcttcgagcgtcattgttagatagtatattgcagggagaacttccttgtgatttg
gagaaaagtaaccctacttacagtattttgtacctcttgcgtgtattggaggcgctgaat
cagcttgccccccgtttgcgattccagtccatgattgatgatttctctgaaggaaaaatt
tctagtctagatgagctcagtactacgggtatcaatattccttctgaggaatttgtcaat
agtaagctcactccgaaattggcccgacagatccaggatgctcttgcactttgtagtggg
tcacttccatcttggtgttaccagttgacaaaggcctgcccatttctttttccatttgag
actcggcgccagtatttctattcaactgcttttgggttgtcacgtgctttacataggctg
catcaacagcaaggtgctgaaggtaatggatctactcatgagagagcagttagggttggt
cgattacagcgccagaaagtgcgtgtctcaaggaaccgcattctggattcggctgcaaaa
gtgatggagatgtactctagccaaaaagctgttcttgaagttgaatattttggtgaagtt
ggtactggcctgggtcctacactggagttttatacccttttaagtcatgatctacaaaaa
gttggacttggaatgtggagatgtgttcatataaataataaattaagtgggggtgataaa
gatctcgtccaagcacctcttggattatttccacgtccctggtcaccacatgctggttct
gttgatggaggtcaattctgtaaggctattgaatatttccgcttgcttggacgtgttatg
gccaaagctcttcaagatggacggcttttggaccttccactgtccactgccttctataag
cttgttcttggccaagagcttgatttgtacgacattatttcttttgatgccgaattgggg
aagactttgcaagagttgcaagctcttgtcagtcgaaagcaatatatagaatcaatggaa
gatcagaacctagacaaatcttatgacatgcatttccgtgggactccagttgaggatctt
tgtttagatttcacacttcctggctatcctgaatatgttcttaaagcaggcgatgagaat
gtggatctcagtaacttggaggaatacatttctttggtagttgatgctactgtcaagact
ggaatcaggcaacaaatggaagcttttagatctggctttactcaggtttttgactattca
gctctacaaatattctctccttcagagctggactatctgttatgcggccgtagagagctg
tggaagcccgagacgctagtagatcacattaaattcgatcacggatacacatccaagagt
cctcccattattcacttactagagattatgggagagttcacacctgagcagcaacgagca
ttctgtcagtttgtcactggtgctccccggctccccgcaggtggtcttgctgctctgaat
cctaagttgacaattgtgaggaagcattcatccagtgctggcaatgcagcacacaacagt
aatgcaccatcagaatctgcagatgaagacctacccagtgtgatgacatgtgctaattac
ttgaaactccctccctattctagtaaggaaatcatgtccaagaagttgctctatgccatt
aatgaaggtcgaggatcattcgatctgtcataa
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