Lycium barbarum (goji berry): 132606928
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Entry
132606928 CDS
T09483
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03013
Nucleocytoplasmic transport
lbb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132606928
03015 mRNA surveillance pathway
132606928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132606928
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132606928
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
132606928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
132606928
NCBI-ProteinID:
XP_060176592
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Position
8:complement(119443103..119450361)
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AA seq
491 aa
AA seq
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MADSSSSTTAASPNPPKETKSWADQADEIDQAEEQSNEEEEEVKIGSLQIDESKTVNSTL
TEPEDLAIEAVTSGDTRYKSAKRFEDLNLSPELLKGLYVEMQFERPSKIQEISLPMILTP
PYKNLIAQAHNGSGKTTCFVLGMLSRIDPKLAAPQALCICPTRELAIQNMEVLLKMGKYT
GITSELGIPPDAANYMPISKRPPITAQVVIGTPGTINKWVTARKLGMSCMKILVFDEADH
MLSESGFQDDSVRIMKAIVKASADCQVLLFSATFGEIVKAFVTKIVRDLFVKDYNQMFVK
KEELSLESVKQYKVQCPDELSKVVVIKDKILELGQKVGQTIIFVRSRNSASMLHKSLVDY
GYEVTTIQGALKQEDRDKIIKEFKEGLTLVLISTDLLARGFDQSQVNLVVNYDLPVRHES
PSEPDHEVYLHRIGRAGRFGRKGAVFNLLCGDRDNMIMSKIENHFNHQVTEITSYKSDED
FENALKKAGLL
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggctgacagttcttctagcaccaccgccgcttcaccaaacccaccaaaggaaaccaaa
agttgggcagaccaagctgatgagatcgatcaagccgaggagcaatctaatgaagaggaa
gaagaagtcaaaattggatctctacaaatagatgagtccaaaacagtcaattcaactctc
actgaacctgaagatttagccatagaagccgttacatctggcgacactcggtacaaatca
gcgaagagatttgaggatttgaacttatctccggagctgttgaagggattatatgtagag
atgcagtttgagcgtcctagcaaaattcaagagattagtttgcctatgattcttacgccg
ccatacaagaatctaattgctcaggctcataatggttctggtaaaactacttgctttgtg
cttgggatgttgagtcgaattgatccaaaacttgctgcccctcaagctctctgtatttgt
ccaaccagagaattggctattcagaatatggaagtgctattgaagatggggaagtacact
gggataacatcagagttaggtatcccaccagatgctgccaactatatgcccatttcaaaa
cgcccacctattactgcccaagtggtaattggcacacctggaaccataaacaagtgggta
acggcaaggaaactggggatgagttgcatgaaaattcttgtatttgatgaagcggaccat
atgttgtcagagagtggttttcaggatgattccgtaagaataatgaaggcaatcgttaaa
gccagcgctgactgccaggtgcttctgttttctgcaacgtttggggaaattgtcaaagca
tttgtgacaaaaattgttagagatcttttcgttaaagattacaaccaaatgtttgtgaag
aaagaagaactttcactggaatcagtgaagcaatataaagtgcagtgtccggatgaactt
tcaaaagtcgtggtgattaaagacaaaatactcgaactgggacagaaggtggggcagaca
atcatattcgttcgttcaagaaacagtgcaagtatgttgcataaatcattggttgactat
ggctatgaagtgacaacaattcaaggtgctcttaagcaagaagacagagacaaaataatc
aaggagttcaaagaaggattgacactagttcttatatcaactgatcttcttgctcgtggg
tttgaccaatcacaggttaatttggtggttaattatgatctccctgtgagacatgagagt
ccatccgagccagatcatgaggtctacttgcatcggattggtagagcagggcgttttggc
cgcaaaggtgccgtattcaacttgctgtgcggtgaccgagacaacatgataatgtcaaag
attgagaaccatttcaaccatcaagtgactgagattacctcatataagagcgatgaggat
tttgagaatgctctgaagaaagctggcttgctgtaa
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