Lycium barbarum (goji berry): 132607168
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Entry
132607168 CDS
T09483
Name
(RefSeq) uncharacterized protein LOC132607168
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132607168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbb03021
]
132607168
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132607168
Transcription machinery [BR:
lbb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
132607168
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
132607168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Pfc11_Clp1_ID
Motif
Other DBs
NCBI-GeneID:
132607168
NCBI-ProteinID:
XP_060177002
LinkDB
All DBs
Position
8:125169839..125179404
Genome browser
AA seq
1019 aa
AA seq
DB search
MEMKSSRRSFDRSNLQSNLKKPRLSEDHPIRAVNSGPTGPRLRAIDSWRDSEISGPYQQQ
HEELISEYKRALAQLTINSKPIITNLTIIAGENLRDAKAIAAVICGNILEIPSEQKLPSL
YLLDSIVKNIGRDYIKHFAARLPEVFCKTYRQVEPSIHSGMHRLFVTWRKVFPPQQLQLI
EKELGFTTGINGSSSGMRRDDSKAQQTANSIHVNPKYLEARQCLQQPSRAKVSADDITPG
GDVQKPERGAATVGSGRSWVDVSTKCVQKGQLNERIREKTIGAAYGDPEYGSDLSRGPGF
GLRITGEKFKEEGFDKSWYNSANGKILSQRNSLDLKHGFQSLSQNTANSDAYPQLKHSFA
NQSSTLMDRSWQSSDEEEYMWDDVNSAGKDQRASEDSYKSSLDNQHPRPQSISGLKADIE
ASADSLSREDKGQASSGSQMSSMWSDGARHSVSGRSTPDHPRGYLTSFRGLSTATNSIVG
KSFQSQKGSTYVGTPSFGIAKTANGSRGPIMQPRETEVAAPPSLEPPKRQLPPSPSVSTS
NVDQVVNSLTREYHMQTESHADPRMSQSSRRSNLDPRNQVSQDSLPMTSQSACLVSSQIS
QTPRYNPSSLTSSLQEGHYVPLPKKIQQESPESESSSLTQKSIVTQLSGFADPSGNVPSI
LPGSESSGQTSMSSLLAAVMKSGVLGSRSSVGTPLNSRDKGPLSSQAAAPSPLSDRNASN
PPNYSQRNGERPQLPPGPAPTLVGGASLQAPNLLNAASNPVANLLSSLVAKGLISASKEE
SPTPTPPQTPPETRFQSPPPASISSTPGVSAPVSSPTVSTPNDELSLSKPAAKIPDALPQ
PTKESRAFKPGVIRESNPGFISGLHDDVPHQCGICGLRLKLRVRLDRHLEWHALRNPDGK
LLHKERNWYLNSVEWITGTGSLPHCGMLTGPIGGSRKLSECTEVMVPADEGQCICFLCGQ
FFEDSYDEESDKWMFKGAVYMNKSSNKSGIQNPIVHKNCISESSQNLKLRDDIKLEWEA
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atggaaatgaagagttctcgtagatcattcgatagatcaaacttacaatcaaatttaaag
aagcctagattaagcgaagaccaccctatccgggccgtgaattcgggccctactgggccg
agacttcgggccattgacagctggcgagattccgagatcagtggaccctaccaacaacaa
catgaggaactgattagtgaatacaagagagcattagctcagctgactattaattcgaag
ccgattattaccaacttgactattattgctggtgagaatttgcgcgatgccaaggcgatt
gctgctgtgatctgcgggaacatacttgagattcctagtgagcaaaagctgccatctctc
tatcttttggacagtattgtgaagaacattgggagggattatatcaagcattttgctgcc
aggcttcctgaggttttctgcaagacttatagacaggttgaaccttcgatacactctggg
atgcatcgtctttttgtaacctggagaaaagtattccctcctcagcaacttcaactgatt
gagaaggagcttggatttacaactggcatcaatggctcttcatcaggaatgcgtagagat
gattcaaaggctcaacagactgcaaatagcattcatgtaaatcccaagtatttggaggca
aggcagtgcctacagcaaccaagcagagcaaaagtatcagctgatgacatcactccagga
ggagacgtacagaaaccagagagaggagcagccactgtaggttctggaagatcttgggtc
gatgtttctactaagtgcgttcagaaagggcagttgaatgagcgaattcgcgagaaaact
ataggtgcagcatatggagatcctgaatatggttctgatttgtcaaggggtcctggcttt
ggattaagaataacaggtgaaaagtttaaggaagagggatttgataaatcttggtacaat
tctgcgaatggtaaaatattaagtcaaagaaatagcttggacctcaaacatggattccaa
agtctatcccagaatactgcaaactctgatgcatatccacaactgaaacactcctttgcc
aatcaaagtagtactttgatggatcggagctggcagagttctgatgaagaggagtatatg
tgggatgatgtcaatagtgcaggtaaagatcaacgggcatccgaagattcatataaatct
agcttagataatcaacatccgagaccccaaagcatatctgggttaaaggctgacattgaa
gcctcggctgactctctttcgagagaagacaaagggcaagcatcttccgggagtcaaatg
tcatcgatgtggtcagatggagctagacattcggtttctggtcgaagtactccagatcat
ccaagaggttatctaacctcgttccgtgggttgtcaacagctacaaactccatagttggg
aaatctttccagtcacagaaaggttcaacttatgtggggacaccaagttttggaatagca
aagacagcaaatggatccaggggacccataatgcaaccacgagaaactgaggtagctgcc
cctccatcgttagagccaccgaagcgtcagcttcctccatctccatcagtctcaactagc
aatgttgatcaagtagttaacagtctcactagagagtatcacatgcagactgaatctcat
gcagatccaagaatgtctcaatcttcaagaaggtcaaatctagatccccgtaaccaagtc
tcccaggactctctgccaatgacatctcagagtgcttgtttggttagttcacagatatca
cagactccaagatataatccatcttccttgacgtcatctcttcaagaaggccattatgtt
ccccttcctaagaaaatccagcaagaaagccccgagtctgaatcttccagtctcacccag
aaatcaatagttactcagctttctggttttgctgatccttctggcaatgtgccttccatt
cttcctggttctgaatcctcaggacaaacgagtatgagcagcttgttggctgctgttatg
aagagtggagtacttggtagtagatctagcgtcggcacgccactgaattctcgtgataag
gggcctctgtcatcccaagccgctgccccatctccactgtcggacagaaatgcttcaaat
cccccaaattattcccagagaaatggagaacgaccacaactgccacctggtcctgctcca
actctggtaggtggtgcatcattgcaggctccaaatttattaaatgctgcttctaatcct
gttgcaaatcttttgagttcattggtggcaaaggggttgatatctgcgtcaaaggaggag
tctccaactccaactcctccacagacacctccagaaactcggttccagagtcctccacct
gcaagcatcagttcaactcctggtgtatctgctccagtttcctcacccactgtctcaact
ccaaacgatgagctctctctctctaaacctgctgctaaaatccctgatgccttacctcag
cccaccaaagaatcgagagcatttaaaccaggtgtaattcgggagtcaaatcctggtttc
atcagcggacttcatgatgacgttccacatcaatgtggcatatgtggtcttcgacttaag
ctccgagtccgacttgatagacacttggaatggcatgcgttgaggaatccagatgggaaa
ctgttgcataaggaaaggaattggtatttaaattctgtggaatggattactggaaccggt
agcctcccacactgtggtatgttaacaggaccaattggaggttctagaaaactgtcagaa
tgcactgaggtgatggttccggctgatgaaggtcagtgtatatgtttcttgtgtggtcag
ttttttgaagattcttatgatgaagagagtgacaagtggatgttcaaaggagctgtttac
atgaataagtcatcgaataaaagcggtattcagaatcctatagtccacaagaactgtata
tcagaaagttctcagaatttgaagcttagggatgatataaaactggaatgggaagcctga
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