Lycium barbarum (goji berry): 132607323
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Entry
132607323 CDS
T09483
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
lbb
Lycium barbarum (goji berry)
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbb03021
]
132607323
03036 Chromosome and associated proteins [BR:
lbb03036
]
132607323
Transcription machinery [BR:
lbb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
132607323
Chromosome and associated proteins [BR:
lbb03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
132607323
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
Tex_central_region
HTH_44
HHH_9
HHH_3
SH2
Tex_N
Motif
Other DBs
NCBI-GeneID:
132607323
NCBI-ProteinID:
XP_060177242
LinkDB
All DBs
Position
8:128266894..128277236
Genome browser
AA seq
1650 aa
AA seq
DB search
MAGKNVISDDEDEVGIEEEERDGDEEPVDGDAVDEREDEDEDEEEEEGQDEYEKDGFIVD
DVEEEEDNEDEEDRADSDDERQKKKKRKKRESERNYVLDEDDYELLQESNIAVPRPKLES
KKFKRLKKAQRGMEDERSGFYEEEEFDETGRRGRTAEQKLEHSLFGDDEGPQLEDIAEEE
ERLEEEEDADIGEEDEMADFIVDEEEVDEHGAPIRRKKVNKKKSRQAPGVSSSALQEAHD
IFGDVDDLLMRRKQDRAKSGMLDESSEWGERRLEDEFDPTILAEKYMTEKDEHIRKIDVP
ERMQISEESTGPVPPEAISVEESNWIYSQLATGVVPLFKKKDSGTTEEVNELPIDKDDIL
RFLDLMHVQKFDVPFIAMYRKEECMSLLKDPEEDETSDDGPDNSDKKPAVRWHKVLWAIQ
DLDRKWLLLQKRKSALELYYKKRFQEESRRVYDETRLKMNHQLFESITKSLQAAESEREV
DDVDSKFNLHFPPGEVGVDEGQYKRPKRKSQYSVCSKAGLWEVASKLGYSAEQLGFHMTL
EKIVDELEDAKEPPEEMASNFTCAMFETPQAVLKGARHMAAVEISCEPSVRKHVRSTYMT
NAVVSTSPTPDGNAVIDSFHQFAGVKWLRDKPLSAFEDAQWLLIQKAEEEKLLQVTIKLP
EVHLNQLMTESRDHYLSDGVSKSAQLWNEQRKLILEDAFFNFLLPSMEKEARSLLTSKAK
NWLLMEYGNVLWNKVSVAPYQRRENDLGSDEEPAPRVMACCWGHGKPATTFVMLDSSGEV
LDILYAGSLSLRGQNVNDEQRKKNDQQRLLKFMMDHQPHVVVLGAVNLSCTRLKEDIYEI
IFKMVEDNPRDVGHEMDNLNIIYGDESLPHLYENSRISADQLPTQSGIVRRAVALGRYLQ
NPLAMVATLCGPGKEILSWKLNNLESFLTPDEKYVMVEQVMVDVTNQVGVDLNLAISHEW
LFAPLQFISGLGPRKAASLQRSLVRQQTIFTRKDLLTEHHLGKKVFVNAVGFLRVRRSGY
TANSNTYIDLLDDTRIHPESYSLAQELAKDIYLKDMGEEDNDDEEVLEMAIEHVKEKPHL
LRSVKTYEYAKEKNRLNKRETLNGIKLELMQGFQDWRRQYVELSQDEEFYMISGESEETL
SEGRIVQATVRRVQAQKAICALECGLTGILTKEDSSDDWRDVNDLTEKMREGDILTCRIK
SIQKNRYQVFLSCKENDMRNNRYQNNQNLDPYYHEDRSSLQSEKEKARKEKELAKKHFKP
RMIVHPRFQNITADEAMELLSDKEPGESIVRPSSRGPSYLTLTLKVYDGVYAHKDIVEGG
KEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVAHLKTMLNYRKFRKGTKAELDE
LLKIEKSEQPTRIVYSFGISHEHPGTFILTYIRSSNPHHEYVGLYPKGFKFRKRMFEEID
RLVAYFQRHINDPHDSGPSIRSVAAMVPMRSPASGGSSGFGGGWGGSSNDSGRRGGRSGD
RDRSSGPGRNDYRNRSSQDDQSGLPPRPYGGGGGGRGRGRGRGRGRGRGNNDNDGQDSDY
GSQKWSSKEGGGGGWGEVQNSPARDTWGGGGSGAGGGSGDGGGWGASPSGGGGGGWGGSG
GGGGWGQDSGGPSEDSGWGGGKKSGGSGGW
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atggctggaaaaaacgtgatctctgatgacgaagatgaagttggaattgaggaagaggaa
agggatggggatgaagagccagttgatggtgatgcagtggatgaacgtgaagacgaggat
gaagacgaagaagaagaggaaggtcaggatgaatatgagaaagatgggtttatagtagat
gatgtagaagaagaagaagacaatgaggatgaagaagatagagctgacagtgatgatgag
aggcaaaaaaagaagaaaaggaagaaaagggagtcggagaggaattacgtgcttgatgaa
gatgattatgaacttctccaggaaagcaatattgcggtgcctcgtccaaaacttgagagc
aaaaagttcaagcggctaaaaaaagctcagaggggtatggaggatgagcgttctggtttt
tatgaggaggaggagtttgacgaaactgggaggcgagggcgtacagctgagcagaagctc
gagcatagcttatttggtgatgatgaagggccacaactcgaggatattgctgaggaggaa
gaaagattggaggaagaagaggatgccgacattggtgaggaagatgaaatggccgacttt
attgttgatgaagaagaagttgatgaacatggtgctcctattagaaggaagaaggtgaac
aaaaagaagtccaggcaggcaccaggagtttcgtcctctgctctccaggaagcccatgac
atatttggtgatgttgatgatcttttgatgcgtcgaaaacaagatcgagcaaaatcgggc
atgctcgatgaatccagtgaatggggtgaaaggagacttgaagatgaatttgatcctact
attctagctgagaagtacatgactgagaaggatgagcacattcgaaagatagatgtccct
gaaagaatgcagatatctgaggaaagcactggtcctgtgccacctgaagccattagtgtg
gaagagagtaactggatctacagtcagcttgctactggtgttgtgcctctttttaagaag
aaagatagtgggacaactgaagaagtgaatgagctgcccatagataaagatgacattttg
agatttctggatttgatgcatgtgcagaagtttgatgtcccattcattgccatgtaccgg
aaggaggaatgcatgagcttattaaaggatccagaagaggatgaaaccagtgatgatggc
ccagataattctgacaaaaaacctgcagtaagatggcataaggtgctttgggcaatccaa
gatttagacagaaagtggctcctccttcagaagcggaagtctgcgcttgagttgtactat
aagaagcggtttcaagaagagtcccgtagggtgtatgacgaaacacgtctaaagatgaat
catcagctctttgaatcaattacaaaatcactccaggcggctgagtctgaaagagaggtt
gacgatgttgactcaaaatttaacttgcacttcccacctggagaggttggtgtggatgaa
ggacaatataagaggccaaagaggaaatcacaatacagtgtttgcagcaaagccggctta
tgggaagtggcaagcaagctgggatacagcgccgagcaacttggttttcacatgacttta
gaaaagatcgtggatgagctggaggatgctaaggaaccaccagaagagatggcatcgaac
ttcacctgtgcaatgtttgaaacaccgcaagctgtgcttaaaggcgctagacacatggca
gcagtagagataagctgtgaaccaagtgtccggaaacatgtgcgtagtacctatatgacc
aatgccgttgtatcaacgagccctactcctgatgggaatgcggtgattgattccttccat
caatttgctggagtcaagtggttacgggataaacctctctccgcatttgaggatgcacag
tggcttctcatacagaaggctgaagaggagaaactcctccaagtaactatcaagctgccc
gaagttcatcttaaccagctgatgactgagtcgagagatcattatctcagcgacggtgtg
agtaaatctgctcagttatggaacgaacagagaaagttaatacttgaggatgcatttttc
aattttcttctgccttcgatggaaaaggaagcaagatccttactaacaagtaaagcaaag
aactggctgcttatggaatatggaaatgttttgtggaataaagtgtcagtggcaccatat
caacgcagagaaaatgatcttggctccgatgaagagcctgcacccagggttatggcttgc
tgttggggccatggaaagccagcaaccacttttgtgatgttggattcgtcgggagaggtt
ttggatatcctgtatgctggatctctcagccttcgtggccagaatgttaatgatgagcag
cggaagaagaatgaccagcagagactcttaaaattcatgatggaccaccaaccacatgtt
gtggtgctaggagctgtaaatctgtcttgtacacggcttaaggaggatatttacgagatt
attttcaagatggtggaggataatccaagagatgttggccatgagatggataatctgaac
ataatatatggagatgaatcccttccgcatctttatgaaaattcccgcatttctgctgac
cagcttcctacacagtcaggtattgtgaggcgggctgtggcattgggacgttatcttcaa
aatcctttagcaatggtagcgacattatgtggaccagggaaggaaattttatcttggaag
ctgaataatttagagagctttctcacaccagacgagaagtacgtgatggttgaacaagtt
atggtggatgtaactaaccaggtgggtgttgatcttaatttggctataagtcatgaatgg
ttgtttgccccgctgcaatttatttcggggctgggtcccagaaaggcagcatctcttcaa
agatccttggtaagacagcagacaatcttcactaggaaggatctcttaactgaacatcat
cttggtaaaaaggtatttgtcaatgcagttggcttcttgcgagtacggcgcagtggatac
actgcaaatagcaatacatatattgatttgttggatgatacaaggattcacccagaatcc
tatagtcttgcacaggagttagcaaaagatatttatcttaaagatatgggtgaagaagat
aatgatgatgaagaagtgcttgaaatggcaatagagcatgttaaagagaagccacatctg
ttgaggtcggttaaaacttatgaatatgctaaagagaagaatcgtttaaataaaagggaa
acccttaatggtataaagttggagctgatgcaagggtttcaagattggcgtagacagtat
gtggagctaagccaggatgaagagttctatatgatttctggtgagtctgaggagacgctt
tctgagggaagaatcgtgcaggcaacagttcgccgggttcaagcacagaaagctatctgt
gctctcgagtgtggattgactggcattcttaccaaggaagattcttcagatgattggaga
gatgtcaatgatttgactgaaaaaatgcgtgaaggtgatatcttaacttgcagaatcaag
tcaatccaaaaaaataggtaccaggttttcctgagttgtaaagagaatgatatgagaaat
aataggtatcagaataatcagaacttggatccgtactaccatgaagatcgcagtagttta
cagagtgaaaaggaaaaagctcgtaaagaaaaggagcttgcaaagaagcatttcaagcca
aggatgatagttcatcctcgattccaaaatataacggcagatgaagcaatggagttgcta
tcggacaaggaaccaggtgaaagtatcgtacgtcccagctcacgtggaccatcgtatttg
actttaactctgaaagtgtacgatggagtttatgctcacaaagatatcgtggaaggtgga
aaggaacataaggacataacaagcttgctccgtatcggaaaaacactgaaaataggagag
gatacttttgaggatttagatgaggtaatggatcggtatgttgatccattagtagctcat
ttgaagacaatgctgaattaccgcaagtttaggaagggaacaaaggccgaacttgatgaa
cttttgaaaattgagaaatctgagcagcctacgaggattgtctatagctttggtatttct
catgaacaccctggaacattcattttgacttatatacggagttccaacccacaccatgag
tatgtgggtctgtacccgaaaggatttaagttccgcaagcggatgtttgaagaaattgat
cgactcgttgcatattttcaaagacacattaatgatcctcatgactctggaccatcaata
cgatcagttgctgcaatggtgcctatgcgcagccctgctagtgggggctcctcaggattt
ggtggcggctggggtggttcatccaatgatagtggtcgaagaggtggtaggtctggggac
agagataggtcttctggaccaggtagaaatgattaccgaaatcgaagcagccaggatgat
caaagtggattgccgcccaggccctacggtggtggcggtggcggacgcgggcgcgggcgt
ggacgtggtcggggacgtggtagaggaaataatgataacgacgggcaagattcagattat
ggctctcaaaagtggagttctaaggaaggtggaggaggaggttggggtgaagtccaaaat
tcacctgctagggacacttggggtggtggtggaagtggtgctggaggtggtagcggagac
ggaggtggttggggtgctagtcctagtggtggtggcggcggcggctggggaggcagtggt
ggcggcggtggatggggacaggattccggtggtccgtccgaggattctggctggggtggc
ggtaaaaagtccggtggcagcggaggttggtga
DBGET
integrated database retrieval system
