Lycium barbarum (goji berry): 132607373
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Entry
132607373 CDS
T09483
Name
(RefSeq) E3 ubiquitin-protein ligase SINAT2-like isoform X1
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
132607373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lbb04121
]
132607373
Enzymes [BR:
lbb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
132607373
Ubiquitin system [BR:
lbb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
132607373
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Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
Rad50_zn_hook
Motif
Other DBs
NCBI-GeneID:
132607373
NCBI-ProteinID:
XP_060177291
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Position
8:complement(129110678..129113778)
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AA seq
362 aa
AA seq
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MVFLCVILPLFPLFDFSNLSSVSTETRDLDSLSQPLSVVNLGYLSCANRSISIKLTNMAP
GGGASCKELVESWQNFTLCDKIKTELDKSITHIGEKFQKSSIHGVHRLLECPICERSMYP
PFYQCPNGHTLCTNCKIGAHNCCPTCQNELGNIRCLALEKVAESLELPCRHQNLGCHKIL
PYYRKLKHEQRCKFRPYHCPYVGSECSIKGDVPTLMLHLKEDHKVDMHTGCTFNHRYVKS
NAHEVENAVWMLTVFDCFGKQFVLHFEAFLLGMTPVYMAFLRFMGEENEAKMFNYSLEVG
GFGRKLTWQGVPRSIRDSHRKVRDCKDGLIIPRSLAIFFSGGNVEELTLKVIGRIWKEHS
TS
NT seq
1089 nt
NT seq
+upstream
nt +downstream
nt
atggtctttctttgcgtaatattaccgttgtttcctctctttgatttttctaatctttca
agtgtttctacagagaccagagacttagactcattaagtcagccactttcagtggttaac
cttggttatttaagttgtgcaaatagaagtatatcaattaagttgacaaatatggctcct
ggaggtggtgctagttgcaaggaacttgtagaatcatggcaaaattttacactttgtgac
aaaataaagacagagctagataaaagtattacacatattggtgaaaagtttcaaaagtct
tcaatccatggtgtccataggttgcttgagtgcccaatctgcgaaaggtccatgtatcct
ccattttaccagtgtccaaatggtcatacactatgcaccaactgcaagattggagcacat
aattgctgccctacttgccaaaatgaactgggaaacataaggtgcttagccttagaaaaa
gtagcagagtcattggaattgccctgcagacatcaaaatcttggctgtcacaaaatatta
ccctactatcgaaagctcaaacacgaacaacgttgcaaatttcgaccttaccattgtcct
tacgttggatcagaatgctcgataaaaggggatgttccaacacttatgttgcatctcaag
gaggaccacaaagttgatatgcatacaggatgcacgtttaatcatcgatatgttaaatcg
aatgcacacgaagttgagaatgctgtatggatgctcacagttttcgactgttttggaaaa
cagtttgtcttgcactttgaggcgtttttgctaggtatgacacctgtttacatggcattt
ctacgttttatgggcgaggagaatgaagccaaaatgttcaactatagtctagaagttggt
ggttttggccgtaagttgacatggcaaggtgttcctaggagtatacgagacagccataga
aaagttcgcgactgtaaagatggacttataattccgagaagcttagcaattttcttctct
ggtgggaacgtagaagagcttacgttgaaggtcataggtcgtatatggaaggagcattcg
actagttaa
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