Lycium barbarum (goji berry): 132607439
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Entry
132607439 CDS
T09483
Name
(RefSeq) tRNAse Z TRZ4, mitochondrial-like isoform X1
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
lbb
Lycium barbarum (goji berry)
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lbb03016
]
132607439
Enzymes [BR:
lbb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
132607439
Transfer RNA biogenesis [BR:
lbb03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
132607439
Prokaryotic type
132607439
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_4
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B
Motif
Other DBs
NCBI-GeneID:
132607439
NCBI-ProteinID:
XP_060177390
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Position
8:complement(130194145..130208252)
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AA seq
799 aa
AA seq
DB search
MSNPKNNVPCENTEAYVQILGTGMDTHETSPSVLLFFNKERFIFNAGEGLQRFCTEHKIK
LSQVDHICLTRVCSETAGGLPGLLLTLAGMNNGSPESTGHVDIWGPPNLDLLVNAMKNFV
PHATMVNKHIIPDNIKIHENGSVLAPSLHMLELKDKHKFKAVSISAILLSPTQLAGSHFR
PNDASIVYICKLHDIRGNFDPEKVKACGLKQGRKLAELEKGFSVKSDLLDIEVHPDDVIG
PPIPGPIVLIVDCPTEPHAQELLSAQALDAYYTDPQSNSPETTKVVNCIIHLSPATVVSS
PVYEKWMSKFGSAQHIMARTTRKHETTPILVSSARIATRLHYLCPRLFPAPSLPSVQNDD
VAAPNFKGSVCGISAENLLKFTLRPPRRLGLDRSSVQNPMTSSVFIEELLSEIPEIADAA
KNISQCWRKPKEDEVELSNIQDSGEVPRCLENVQRDDLEIVFLGTGSSIPSKYRNVSSIY
VNLFSKGGLLLDCGEGTLAQLKRRYGINGADSAVRNLKCIWISHIHADHHAGLARILALR
RDLLKGVAHEPMPVIGPEQVGEFLKVYVKLEDLDMLFLDCRSTMGSKRDNMEDDSVHDES
REYRDHTLLTSLSEDSSLLRCSKRMKPSTPVDDITLLRCFKKVLSEAGLVRLISFPVVHC
PEAFGVILESAEIVNCGKVIPGWKVVYSGDTRPCSQVIEASLGATILIHEATFEDGLVEE
AIARNHSTIKEATEVGHSADAYRVILTHFSQRYPKVPALDEVSMQRTCIAFDLMSVNLVD
LPVLPKVLPHLKLLFRNFG
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaccccaaaaataatgttccctgcgaaaatacagaagcctatgtccagatttta
gggacaggaatggatacccacgaaacatccccgtctgttctgctcttctttaacaaggaa
agattcatatttaacgctggagagggattacaacgcttctgtacagagcataagataaaa
ttatctcaggtagaccacatatgtctgactcgtgtctgctcagagacagcaggtggactt
ccaggcttgctattaactttggctggcatgaacaatggtagtcctgagagtactgggcat
gtcgatatatggggtcctccaaatctagatttattggttaatgcaatgaagaattttgtc
cctcatgctaccatggtcaacaaacatatcatcccagacaacattaagattcatgaaaat
ggatctgtattagctccctctttacatatgctggagctgaaagataaacacaagttcaag
gcagttagtatatcagctattctcctatcaccgactcagttggctggatctcattttagg
ccaaatgatgcctccattgtatatatttgtaaactacatgacatcagggggaattttgat
cccgaaaaggttaaagcttgcggacttaaacaagggagaaaacttgcagaattggagaag
gggttcagtgtgaagtcagatcttctggatattgaggtccatccagatgatgttataggt
ccacctattcctggtcccattgtactgattgttgactgtccaacagaacctcatgcacaa
gagttactctctgcgcaggcccttgatgcctattatacagatccccaaagcaactcccca
gagaccaccaaggttgtgaactgcatcattcatttgagccctgctacagtcgtcagcagt
ccagtctatgagaaatggatgagcaaatttggttccgcccaacatattatggcaagaact
acaaggaagcatgaaacaactccaattctagtatctagtgctagaatcgctacaagactg
cattatttgtgtcctcggctttttccagctcctagtcttccttctgttcagaatgacgat
gttgcagcaccaaatttcaagggttcagtttgtggcatatctgctgaaaatctcttaaag
ttcaccttacgtcctcctagacgactgggattggacagatcaagtgttcaaaatccgatg
acctcttcagtgttcattgaagagttactttcggagattcctgagattgctgatgcagca
aagaacataagccaatgttggcgcaaacctaaagaagatgaggtggaattatccaatatt
caggacagtggtgaagtcccaaggtgtctggagaatgtacagagagatgatctggagatt
gtttttcttggcaccggttcatctataccttcaaaataccgaaatgtcagttccatctat
gttaatcttttctctaaagggggtttgctccttgattgtggagaaggaaccctggcacaa
ctcaagaggagatatgggattaatggtgcagacagtgcagttaggaatcttaaatgcatt
tggatttctcatatccatgctgatcaccacgcaggtttggcacggatacttgctttgaga
cgtgatttgttgaagggagtagcccatgaacccatgccggttattgggccagagcaggtt
ggggagtttctcaaggtatatgtaaagttagaagatctagacatgttgttcctcgactgt
aggagcactatggggtctaagcgggataacatggaggatgactctgtgcatgatgaaagt
agagaatatagagatcatactctgttgacttctctttccgaagacagttctctgctgcgc
tgttcaaaaagaatgaagccaagcactccagttgatgacataacattgctaaggtgtttc
aagaaagttttgagtgaagcagggctagtgagactcatcagcttccctgttgtacactgt
cctgaggcgtttggtgtcatcttggaatcagcagaaatagtgaattgcgggaaagtaata
ccaggttggaaggttgtgtactctggtgacacgaggccatgctcacaagttatagaagca
tctcttggagcaacaattcttatacatgaggcgaccttcgaggatggcctggtggaggag
gctatagcaagaaaccacagcacaattaaggaagctacagaagtcggacattcggctgat
gcataccgggtaatattgactcacttcagccagagatacccaaaagtacctgcacttgat
gaagtgagcatgcaaagaacttgtattgcgtttgacctgatgagtgtaaacctagtagat
ttgccagtgctccctaaggttcttccgcacctcaaattgcttttcagaaactttggttaa
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