Lycium barbarum (goji berry): 132607502
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Entry
132607502 CDS
T09483
Name
(RefSeq) squalene synthase-like isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb00100
Steroid biosynthesis
lbb00909
Sesquiterpenoid and triterpenoid biosynthesis
lbb01100
Metabolic pathways
lbb01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
132607502
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
132607502
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
lbb01006
]
132607502
Enzymes [BR:
lbb01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
132607502
Prenyltransferases [BR:
lbb01006
]
Terpene biosynthesis
Squalene/phytoene synthase
132607502
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Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Ig_F54D1_6
Motif
Other DBs
NCBI-GeneID:
132607502
NCBI-ProteinID:
XP_060177488
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Position
8:complement(131536156..131541639)
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AA seq
411 aa
AA seq
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MKLLRMGEIMRHPDELSPLMKLMLSAKHIEKKTPLQPHWAFCYITLRKVSRSFALVIQQL
PSDLRDVVCVYYLVLRALDTVEDDTSLATEIRVPILRNFYCHFYDPEWHFSCGTKAFKVL
MDQFHHVSSAFLELGKNYQEVIKDITKRMGEGMAKFLCKEVETIDDYNEYCHYAAGLCGL
GLSKLFYASGREDLAPESLSLSMGLFLQKISIIRDYLEDINEEPKCRMFWPRQIWSKYVN
KLEDFKYDENSAKAVQCLNEMVTNALLHAEDSLAYMSNLRDPAIFRFCAIPQIINMGNLT
MYYTNSEIFKGIVEMRRGLCAKIIDQTKTMVDVYGAFFDFCCTMESKVDCDDPNATSTLK
RLEEILRTCRDSGTLNQRKSFIFSHQPKYILPVLTILFFITLAILLSTKIA
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgaagttactaagaatgggggagataatgaggcatccagatgagttatccccattgatg
aagctcatgctatctgctaaacacatcgaaaagaagacgccattgcagccacactgggcc
ttctgctatattactctccgaaaggtctctcgtagttttgctctcgtcattcaacagctt
cctagcgatcttcgagacgtagtttgtgtttactatttggttcttcgagcacttgacact
gttgaggatgataccagcttagccactgagattagagtacctatcttgagaaacttttat
tgccacttctatgatcctgaatggcatttttcatgtggtacaaaggccttcaaggttctc
atggaccaattccatcatgtttccagtgctttcctggagcttggtaaaaattatcaggag
gtgattaaggatattaccaagagaatgggtgaaggaatggcaaaatttctatgcaaggag
gtagaaacaatcgacgattataatgaatattgtcactatgcagctggactttgtggatta
ggattgtcaaaacttttttatgcttctggaagagaagatttagcaccagaatccctctcc
ctttccatgggtttatttcttcagaaaataagcatcattagagattatctggaggacata
aatgaagaacccaagtgtcgaatgttttggccccgtcaaatttggagtaaatatgttaac
aaacttgaggactttaagtatgatgaaaactcagccaaggcagtacaatgtctgaacgaa
atggtcactaatgctttgttacatgcagaagatagtctggcttacatgtctaatctacgc
gatccagctatctttcggttctgtgcaattcctcagatcataaatatggggaatttgacg
atgtactacaccaacagtgaaattttcaaaggtatcgttgaaatgagacgaggcctctgt
gctaagattattgatcagaccaagacaatggtggatgtctacggagctttctttgacttc
tgttgtacaatggaatccaaggttgactgtgatgatccaaatgcaacgagtactttgaag
aggcttgaagaaatcttgagaacctgcagagactctggaaccttgaatcaaaggaaatct
ttcatattcagccatcagcctaaatatattcttccagttttgactattttatttttcatc
acgctggctattcttttatccacgaaaatagcttag
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