Lycium barbarum (goji berry): 132608403
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Entry
132608403 CDS
T09483
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
132608403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lbb04121
]
132608403
Ubiquitin system [BR:
lbb04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
132608403
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
LRR_At5g56370
F-box_5
DUF7885
LRR_4
LRR_6
F-box-like
F-box
LRR_8
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
132608403
NCBI-ProteinID:
XP_060178396
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Position
1:171325531..171329716
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AA seq
578 aa
AA seq
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MAHSFPEQVLKHLFSFLASDKERNSVSLVCKSWYEIERRCRKSVFIGNCYSVSPEIMIKR
FPEVRSVTLKGKPHFADFNLVPEGWGAYVEPWIIAMSRSYPLLEEIRLKRMVVSDESLEL
ISTSFDNFKVLVLLSCEGFTTDGLAAIAANCRNLRELDLGESEVEDLSSDWLSHFPDSCT
SLVSLNISCLGPEISFSDLERLIAHSPNLKTLRLSQAVPLEKLPDLLCHASQLVEFGTGA
YSSEVRSDIFSNLEEAFSGCKRLEGLSGFWDVEAAYLPAIYPVCSRLTSLNLSYATIQSP
DLDKLISQCHNLQRLWVLDYIEDTGLQALAASCKNLEELRVFPSDPFLPEPNVILTEQGL
VAVSEGCPKLQTVLYFCRQMTNAALVTIARNRPNMIRFRLCVIEPRAPDYLTLEPLDAGF
GAIVEQCKELRRLSLSGLLTDRVFEYIGTHAKKLEMLSIAFAGDSDMGLHHVLSGCESLR
KLEIRDCPFGDEALLANAAKLETMRSLWMSSCSVSFGACKLLAQKLPKLNVEVIDEMGPP
DMRPESSPVDKLYIYRTVAGPRFDMPGFVWTLNEDAKH
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atggcccactcattcccagaacaagtgttgaagcacttgttttccttcttagcctcagac
aaggaacggaacagtgtatccttagtgtgtaaatcatggtacgagatcgaaaggcggtgt
aggaagagtgtgttcatcgggaactgctactctgtcagccctgagattatgatcaaacgg
ttccctgaagtcagatctgtaaccctgaaagggaagccacattttgcagactttaatctt
gttcctgagggttggggtgcctatgttgaaccttggattattgcaatgtctaggtcttat
cctttgcttgaagagattagacttaagagaatggttgtcagtgatgagtctttggagttg
atttctacttcctttgacaattttaaagtgttggtcttgttgtcttgtgaaggctttact
actgatggacttgctgccattgccgctaactgcaggaatctgagagaactagacttggga
gaaagtgaagtggaggacctaagtagcgattggctcagtcattttcctgatagttgtact
tcactggtgtcactcaacatttcttgtttgggtcctgagatcagcttctcagatctggag
cgtctgattgctcactctcctaatttgaagacacttcggctcagtcaagctgtgcccctt
gagaagcttccagacctactgtgccacgcttcccaattggttgaatttggtacaggtgcc
tactcttctgaggtacggtctgatattttctcaaacttggaagaagctttttcaggctgc
aagagacttgaaggcttgtctggattttgggatgtcgaagcagcttaccttccagctata
tatccagtttgctccagactcacctcactgaatttaagctatgctactattcaaagccct
gatcttgacaagctaataagtcagtgtcacaatttgcagagattgtgggtactagactac
attgaagatactggtctccaggcgcttgctgcttcctgtaagaaccttgaagaacttagg
gtgtttccttctgatccctttcttccagaaccaaatgttatcctgacagagcagggcctt
gtagctgtctcagaaggctgccctaagctccaaacagttttatacttctgccgccaaatg
acaaatgccgctttggttactattgctagaaaccgacctaacatgatccgttttcgcttg
tgtgttattgaaccgcgagctcctgattacttgactcttgaaccacttgatgctggtttt
ggggcaatagtggaacaatgcaaagagttgcggcgactctctctttctggcctccttact
gaccgtgtttttgagtacattgggacccatgctaagaagttagagatgctttccatcgct
tttgctggagatagtgatatgggcctccaccatgtgctctctggttgtgagagcctcaga
aaactagagatcagagactgcccctttggcgacgaggctcttttggctaatgctgcaaag
ctggagacaatgagatccctttggatgtcttcttgttcagtaagttttggagcctgtaag
ctgctagctcagaagctgcctaagcttaatgttgaagttatagatgagatgggtcctcca
gacatgcggccagaaagcagccctgttgataaactttacatataccgaacagtggctgga
ccaaggtttgacatgcctggttttgtttggacattgaatgaagatgccaaacattag
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