Lycium barbarum (goji berry): 132608935
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Entry
132608935 CDS
T09483
Name
(RefSeq) DNA mismatch repair protein PMS1 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03430
Mismatch repair
lbb03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
132608935
03460 Fanconi anemia pathway
132608935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lbb03400
]
132608935
DNA repair and recombination proteins [BR:
lbb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
132608935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
132608935
NCBI-ProteinID:
XP_060178720
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Position
9:complement(17235170..17244092)
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AA seq
999 aa
AA seq
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MEGAGTSGSPSTIKAINKGVVHRICAGQVILDLPSAVKELVENSLDAGATSIEVSLKDYG
AESFQVIDNGCGISPNNFKVLALKHHTSKLSDIPDLQSLATFGFRGEALSSLCALGDLTV
ETKTKNEQIATHLTFDHSGLLIAERNTARQVGTTVTVKKLFSTLPVRSKEFHRNIRKEYG
KLITLLNAYALISKGVRLVCTNSALKNAKSVVLKTQGSGSLKDNIITIFGMSTFTCLEPL
KICMSDGCTVEGFISKSGYGSGRNLGDRQYFFVNGRPVDMPKVGKLVNELYRGANSRQYP
IAIMNFAIPPSAFDVNVTPDKRKIFLSDEGSILHSLREALEKIYSSNYASYAVNSLQEVE
EKNTSTPSQLEAFQFQSKQLLSDSADTQEGEYVGELPKEGHFLKKAQKELKDISVTEVML
NDGNRSTEKDFSLRFHGKKKDNNSSRSPWKEVGGLTTAITNRHALTPGSKDKSCIDTACC
VDRASIVQSSLTKFVTVNKRKHESMSTTLSEVPLLRNGLTVCPSGEDNSLKDTTSLRSLD
NPVKADKCDEVTIKESGSSKFSKIDNFLHQMKHSRNGLTVSPSGEDNSLKDTTSLRSPDN
PVKADKCDEVTINESGSSKFSKLDRFLQQMKHSRMATVLDRTNNLPPPGNSIQNGKSEEE
HEVQMNELCVTEPVPLDSTSNNIHDVSENMVDAASSEQPASLTLDAPKASSNREIVSTLQ
FSVKELIPRRKQRLSRLQLLNCTSQRMKTKRDFAAATLELSESENEEAKARALIDATNEL
ERLFKKEDFTKMKVIGQFNLGFIIGRLDQDLFIVDQHAADEKYNFERLSQSTILNQQPLL
RPLKMELSPEEEIVISIHNDTFRRNGFLLEEDLCAPPGNRFKLKAVPFSKNITFGIADVK
ELISILADSEEECSMMGTYRDDRADSLCPPRVRAMFASRACRSSVFIGDPLGRNEMRKIL
DNLSRLKSPWNCPHGRPTMRHLVDLRTVHRRLEADETTL
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atggagggagcaggaacctcaggttcaccgtcgactataaaggcgataaacaagggagta
gtgcatagaatctgtgcgggtcaagttattctcgaccttccctcagccgtcaaggagtta
gttgagaacagcttggatgctggcgctaccagcattgaagtttccctcaaagactatggc
gctgaatccttccaggtcatcgataatggttgtggcatttcaccgaacaacttcaaggta
ctggccctaaaacatcatacctcaaaactatcagatattcctgatcttcagtcattagcg
acttttggatttagaggggaggcattgagttcactttgtgctttaggggatttaacggtt
gaaacaaaaacgaagaatgagcaaattgcgacacacttgacttttgatcattcgggcctt
ctgatagctgaaaggaacacggctcgccaagttggtaccactgtcactgttaagaagttg
ttctccactttaccagtgcgaagtaaagagtttcaccgcaatatccgaaaggaatatgga
aagcttatcacattgctgaatgcgtatgctcttatttctaagggagtcagactagtttgc
accaactcagctctcaaaaatgcaaaatctgtagttctgaagactcagggaagtggatcc
ctgaaagataacattataacaatatttggtatgagtacctttacttgtctggagcctctc
aaaatatgtatgtcggatggttgcactgttgaaggattcatttccaagtctggctatggt
agtggacgcaacttaggagatcgacaatacttttttgtgaatggacggccggtagatatg
ccaaaagttggcaagcttgtcaatgagttgtatagaggtgcaaactctcggcaatatccc
attgcaattatgaactttgcaatcccaccaagtgcatttgatgtcaatgtaactcctgat
aaaagaaaaatatttttgtctgacgaaggctccatattgcactctttgagagaagcttta
gaaaagatatactcatctaattatgctagttatgctgttaatagtctccaagaggttgaa
gaaaagaatacatccactccttcccaacttgaggcctttcagtttcaatccaagcaatta
ttgtcagatagcgctgatactcaggaaggtgaatacgttggagaactacctaaagaaggt
cattttctcaaaaaagctcaaaaggaattaaaagatatatctgtcacggaggtgatgcta
aatgatggaaacaggtcaaccgagaaagacttcagtcttcgattccatggaaagaagaaa
gacaataacagttccagaagtccctggaaggaagtcggaggtctgactactgctataacc
aacagacatgcactcaccccgggctcaaaagataaaagctgtatcgatactgcatgttgt
gtcgatcgtgcaagcattgtccagtcatcactcaccaaatttgttacggtaaataagaga
aagcacgagagtatgagtaccacattatctgaggtacctctcctgagaaatggattgact
gtgtgtccatcaggagaagacaattctttgaaggataccacatccttaagatctctggat
aatccagttaaggctgataagtgtgatgaagtgaccattaaagagtctggatcttccaag
ttctcaaagatagataactttcttcatcaaatgaagcactcaagaaatggattgactgtg
agtccatcaggagaagacaattctttgaaggatactacatccttaagatctccagataat
ccagttaaggctgataagtgtgatgaagtgaccattaatgagtctggatcttccaagttc
tcaaagttagatagatttcttcagcaaatgaagcactcaagaatggctacagtccttgat
cgaacaaataatttacctccacctggaaatagtatacaaaatggaaaatctgaggaggag
catgaggttcaaatgaatgaattatgtgtaactgaaccagtgcctcttgattctactagc
aacaacatccatgatgtgtcagaaaatatggtagatgctgcttcttctgaacagcctgct
agtctgactctggatgctcctaaggcttcatctaatagagagattgtttcgacattgcaa
tttagtgtgaaagaactaataccaagaaggaagcagaggctgtcaagattgcaactcctt
aattgtacatctcaaagaatgaaaacaaagagggattttgctgcagcaaccctggagctc
tccgaatcagaaaatgaagaggccaaggcaagggcattgattgatgctaccaatgagttg
gagagacttttcaagaaagaagattttactaaaatgaaggtgattgggcaattcaatctt
ggattcattataggcaggttggatcaagacctttttattgttgatcagcatgccgcagac
gagaaatataattttgagcgtctgtcgcaatcaactatcttgaatcagcaacctttactt
cggcccttgaagatggagttatctcctgaagaagaaatagttatttccatccacaatgat
acattcaggagaaatggatttctattggaagaggatctgtgcgctcctccagggaatcgt
tttaagctaaaagcagtccccttcagtaaaaatataacttttggaattgcagatgtgaaa
gaactcatttccattcttgctgatagtgaggaagaatgttccatgatgggtacttatagg
gatgatagagccgattcattatgtcctcctagagttcgtgcaatgtttgcatcgcgtgcc
tgcagatcttctgtctttattggagatccacttgggagaaatgagatgcgaaagatactt
gataatctatcacgcctcaagtctccatggaattgtccacatggtagaccgacaatgcgt
cacttagttgatctgaggactgtacatagaagattagaagcagatgagaccaccttataa
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