Lycium barbarum (goji berry): 132608949
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Entry
132608949 CDS
T09483
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
lbb
Lycium barbarum (goji berry)
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lbb03041
]
132608949
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132608949
Spliceosome [BR:
lbb03041
]
Complex C
Other components
Complex C specific factors
132608949
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
AAA_30
ResIII
AAA_29
AAA_7
AAA_11
nSTAND3
AAA_23
Motif
Other DBs
NCBI-GeneID:
132608949
NCBI-ProteinID:
XP_060178746
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All DBs
Position
9:1843072..1853578
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AA seq
691 aa
AA seq
DB search
MSQFWKPGTERPRIVDDEEGGVVLYPTSSSSSSGFGYGSLEKQRQRLPVYKYKTAILYSV
ETHATTIIVGETGSGKTTQIPQYLKDAGWAEGGRMIACTQPRRLAVQAVATRVAEEMDVK
LGEEVGYTIRFEDVTNEELTRVKFLTDGVLLREMMDDPLLSKYSVIMVDEAHERSLSTDI
LLGLLKKIQRRRPELRIIISSATIEAKSMAAFFTTSRRRREQEQGPTKEPAILSVEGRGF
NVEIFYVEDPVSDYIRASVSTVMSIHDQERMGDILVFLTGQDDIDAAIQLLTEEAQSSGK
QGLVTVPLYSGLPRADQDLVFSPTPRGKRKVIFSTNIAETSLTLEGIVYVVDSGFSKQKF
YNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTQDYFANEMSVVGIPEIQRSN
LVSCVIQLKALGIDNILGFDWPASPSPESMIRALEVLYSLGVLDDDAKLTSPTGFQVAEI
PLDPLISKMVLASCEFGCSEEIITIAAVLSIQSIWIPVRGVQKQLDEAKLRFAAAEGDHV
TFLNVYKGFIKSNKSSKWCHKNFINYHAMRKVIEVREQLKRITLRLGIGLKSCEGDIQAV
RKAITAGFFANAARLEPFSHNGMYKTVRTSQEVYIHPSSVLFRVNPKFIVYHSLVSTDRQ
YMRNVITIDPSWLTEAAPHFYQKQMHSSIPQ
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaattttggaaaccaggaacagaacgacctcgtattgtagatgatgaagaaggt
ggcgttgttctttaccctacatcttcctcttcttcctctggatttgggtatgggagttta
gagaagcaaaggcagaggctgcctgtgtacaagtacaaaactgctattctttactcagtg
gagactcatgctaccaccattattgttggagaaactggcagtggcaaaactacccaaatt
cctcagtacctgaaagatgctggttgggctgaaggagggcgcatgatagcttgcactcaa
ccaaggagactggcagtccaggcagtcgctacaagagttgctgaagaaatggatgttaaa
cttggtgaggaagttggttatactattcgatttgaagatgtcacaaatgaggaattaact
agggtcaaattccttactgatggagttttgctgagggaaatgatggacgatcctctattg
agcaagtatagtgtgataatggtagatgaagctcacgaaaggtctctctcgacagacatc
ttattgggactactgaaaaagattcaaaggcgtcggccagagctgcgtattataatatca
tcggctacgattgaagcaaaatcaatggctgctttctttactaccagcagaagacgaaga
gagcaggagcaaggaccaacaaaagaacctgctattctgtcagttgagggtaggggattt
aatgtggagatattctatgttgaagatcctgtctctgattacattcgggcctctgtttca
acagtgatgtcgatccatgaccaggagcggatgggagatatcttggtatttctaactggt
caagatgacattgatgctgcaatacagttgctcactgaagaagcccaaagtagtgggaag
caagggctggttactgtgccactgtactcgggacttcctcgagcagatcaggaccttgtg
ttttcccctactcccagaggaaagagaaaagtaatattttcaacaaatattgctgagacg
tcattaactctagagggtattgtctatgttgttgatagcgggttctcaaaacaaaaattc
tacaacccgatttcagatattgagaatttggtagtggcaccaatatcaaaggcatctgct
cgacaaagggctggtagagctggaagagttcgaccaggaaagtgttataggctctacaca
caagattattttgccaacgagatgtctgtggtgggaatccctgagatacagagatcaaac
ctcgtttcctgtgtcatccagttgaaggccttaggcatcgataatatcttaggttttgat
tggccagcatctccatcacctgaatcgatgatcagagcacttgaagtactgtactccctt
ggagtactagatgacgatgccaaacttacttcaccaactggatttcaagttgcagagatt
ccactggacccattaatatctaaaatggtcttggcttcttgtgagtttggatgttcggag
gaaataattaccattgctgctgtgctctccatacagtctatttggattcctgttagagga
gtacagaaacagttggatgaagcaaaattgagatttgcagctgccgagggtgaccatgtc
acattcttaaatgtgtataaaggattcattaagtctaacaaatcttcgaagtggtgtcac
aagaattttataaattatcatgccatgagaaaagtaatcgaagttagggaacagctcaaa
agaattacactacggttgggcataggattgaaatcttgtgaaggggatattcaggcagta
aggaaggcaattacagcggggtttttcgccaatgctgcccgtttagaaccattcagccac
aatgggatgtataaaactgtcagaacttctcaagaagtttatattcatccttcatccgtg
cttttcagggtcaacccgaagtttatcgtgtaccattcgcttgtttcaacggatcgacaa
tacatgcgaaatgtcattactatcgatccttcttggctaacggaggctgctccgcatttt
tatcagaagcagatgcatagttctattcctcaataa
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