Lycium barbarum (goji berry): 132609225
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Entry
132609225 CDS
T09483
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03040
Spliceosome
lbb04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132609225
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
132609225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lbb03041
]
132609225
04121 Ubiquitin system [BR:
lbb04121
]
132609225
03400 DNA repair and recombination proteins [BR:
lbb03400
]
132609225
Enzymes [BR:
lbb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
132609225
Spliceosome [BR:
lbb03041
]
Complex B
Other components
Prp19 complex
132609225
Complex C
Prp19-CDC5 complex
132609225
Ubiquitin system [BR:
lbb04121
]
Ubiquitin ligases (E3)
U-box type E3
132609225
DNA repair and recombination proteins [BR:
lbb03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
132609225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Beta-prop_EML_2
Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_MABP1-WDR62_2nd
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
ANAPC4_WD40
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
NBCH_WD40
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_Aladin
Beta-prop_HPS5
Beta-prop_DCAF12
PEP5_VPS11_N
PROPPIN
Beta-prop_WDR41
U-box
Beta-prop_SPT8
Beta-prop_DCAF4
zf-Nse
Beta-prop_VPS8
WD40_like
KNTC1_N
WDR54
Beta-prop_ACSF4
PAS_11
V_ATPase_I_N
PUMA_CC
Orexin
Motif
Other DBs
NCBI-GeneID:
132609225
NCBI-ProteinID:
XP_060179085
LinkDB
All DBs
Position
9:10017708..10027823
Genome browser
AA seq
521 aa
AA seq
DB search
MNCSISGEVPEDPVVSKKSGLLFEKRLIERHISDYGKCPVTGEPLTTDDIIPVKTGKIVK
PRPVQAASIPGMLGMFQIEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARGLLAQAERQIPMAATTAVDTAALSNGKRAAGDEEMGPDGKKIRPGISQTVIETL
TDCNAALSQQRKKRQIPATLAPVDAVERYTQLNSYPLHKTNKPGVLSLDIHYAKDIIATG
GVDSNAVVFDRPSGQIISTLSGHSKRVTSVKFAAEGEIVVSGSTDKTVRVWQDSKNGSYD
CRYVLKDHTAEVQAVTVHATDNYFVTASLDSTWCFYDLATGLCLTQVADASDSEGYTSAA
FHPDGLILGTGTSGSLVKIWDVKSQANVAKFDGHVGSVTAISFSENGYFLATAAQDGVKL
WDLRKLKNFRTFSPYDENTPTQSVEFDHSGSYLALGGSDIRVYQVASVKAEWNHIKTFPD
LSGTGKATCLKFGPDASYIAVGSMDRNLRIFGLPGEDHMEG
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgaactgttcaatttcgggtgaggtgccggaggatccagtggtttcgaagaagtcagga
ctccttttcgagaagcgtttaattgaacgacacatctccgattatggtaaatgtcctgtt
accggagagccattgacgacggatgacattatccctgttaaaactggcaagatagttaaa
ccccgacctgtacaggctgctagcattcctgggatgttgggaatgtttcaaatagagtgg
gatggtctgatgctgtcaaattttgcattggaacaacaactacatactgcaaggcaagag
ctgagccatgctttatatcagcatgatgctgcctgcagggtaattgcaaggctgaagaag
gaaagggatgaggcaagggggttgcttgcgcaggctgaaagacaaataccaatggcagcc
actacagcagttgacactgctgctttaagcaacgggaaaagagctgccggggatgaggag
atgggccctgatggaaagaaaattcgccctggaatatcgcagaccgtcattgagactctt
acagactgtaatgctgccctttcacaacaaaggaaaaaacgacagataccggcaacattg
gcccctgtggatgctgttgagagatatacccaactgaatagttatcctcttcacaaaacc
aacaaacctggcgttttgtccttggatattcattatgctaaggacataattgctactggt
ggagttgattcaaatgctgtggtctttgatcgaccttcaggacaaattatatcaacacta
agtggtcattcaaagagggttaccagtgtaaaatttgcggctgagggtgaaatagtagtc
tctggttcaacagataagacagttcgtgtgtggcaagattctaaaaatggaagttatgac
tgtaggtatgtcttgaaggatcatacagcagaggtacaagctgtcactgtccatgcaacc
gataattattttgtgactgcttctcttgatagcacgtggtgcttttatgatcttgctact
ggtttatgccttacacaggtagcagatgcttcagattctgagggctatacttccgcagct
ttccaccctgatggtttgatccttggaacagggacttcagggtctctggtcaagatatgg
gatgttaaaagtcaggcaaatgttgcaaaatttgatggccatgttgggtctgtaactgct
atttccttttcagaaaatggttatttcttagctactgctgctcaagatggtgttaaactt
tgggatttacgcaaattgaagaactttagaactttctctccttacgatgaaaatacacca
actcaatcagtggaatttgaccatagtggaagctatcttgccttgggaggctcagatata
cgagtttatcaagtcgccagtgttaaggctgagtggaatcacatcaaaaccttccccgac
ttatcaggcacaggtaaagcaacatgtctgaaatttggtccagatgcatcttacatagct
gtcggatctatggaccggaatttaagaatatttgggctgcctggtgaggatcatatggag
ggttag
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integrated database retrieval system
