Lycium barbarum (goji berry): 132609227
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Entry
132609227 CDS
T09483
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
132609227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lbb04121
]
132609227
Ubiquitin system [BR:
lbb04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
132609227
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_6
F-box-like
LRR_4
F-box
LRR_NXF1-5
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
132609227
NCBI-ProteinID:
XP_060179087
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Position
9:complement(18777054..18782384)
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AA seq
581 aa
AA seq
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MAYSFPEEVLEHVFSFLNSDKDRNAVSLVCKSWYDIERWCRKTIFIGNCYAINPRIMIRR
FPEVRSVELKGKPHFADFNLVPDGWGAYVYPWILAMSRSYPWLEEIKLKRMVITDESLEL
ISKSFKHFKVLVLSSCDGFTTDGLAAIAANCRNLRELDLGECEVEDLSGHWLSHFPDSCT
SLVSLNIACLASEVSFLALERLVARSPNLRTLRINRAVPLEKIPNLLRRASQLVEFGTGA
YSADVRSDVFSNLTEAFSGCKHLKGLSGFWDVVPAYLPAIYPACSRLTSLNLSYATCQNP
ELGKLVSQCHNLQRLWVLDYIEDTGLEELAANCKDLQELRVFPSDPFAQEPNATLTEQGL
VAVSDGCPKLQSVLYFCRQMTNAALVTIAKNRPNMIRFRLCIIEPRTPDYLTLGPLDAGF
GAIVENCKELRRLSLSGLLTDRVFEYIGTHAKKLEMLSIAFAGDSDLGLHHVLSGCDSLR
KLEIRDCPFGDKAVLANAAKLETMRSLWMSSCSVSFEACKLLAQKMPRLNVEVIDERGPP
DTRPESCPVEKLYIYRTVAGRRFDTPGYVWTMDEDAAVRLS
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atggcatactcattccctgaagaagtactcgaacacgtgttctccttccttaattccgac
aaagaccgtaacgccgtatcacttgtctgtaaatcatggtacgacatcgaacgttggtgt
cgtaaaacgatattcatcggtaactgctatgctattaatcctaggattatgatcagaagg
tttccagaagtcagatctgttgaattaaaagggaaaccacattttgctgattttaattta
gtacctgatggttggggtgcttatgtttatccatggattttggctatgtctaggtcttat
ccatggttagaagaaattaagcttaaaaggatggttattactgatgaatctttggagttg
atttctaagtcgtttaaacattttaaggttcttgttttgtcttcttgtgatggttttact
actgatggacttgctgctattgccgctaattgcaggaatctgagagaactagacttggga
gagtgtgaagtggaggaccttagtggacattggctaagccatttccctgatagctgcaca
tcacttgtttcacttaacattgcctgtttggcttctgaggtcagtttcctagctttggag
cgcctggttgcccgctctcctaatttgaggactcttcggataaatcgtgccgtgcccctt
gagaagattccaaacctgcttcgccgcgcttcccagttggtcgaatttggtacaggtgcc
tactctgctgatgtgcgctctgatgtcttctcgaacctgacagaagccttttcgggctgc
aagcatcttaaaggcttgtcagggttttgggatgttgtaccggcttaccttccagctata
tatccagcgtgctcaagacttacctctttgaacttgagctatgctacttgtcaaaacccg
gagctcggcaagctcgtaagtcagtgtcacaatttgcagcggttgtgggtgctagactac
attgaagataccggtcttgaggaacttgctgccaattgtaaggaccttcaagagctgagg
gtgtttccttctgacccgtttgctcaagaaccaaatgcaaccttgacggagcaaggcctt
gtagctgtctcagatggctgcccaaagctccagtccgttttatacttctgccgccaaatg
actaatgcagctttagttactattgctaagaatcgtcctaacatgattcgttttcgcttg
tgtattattgagcctcgaactcctgattacttaacccttgggccgcttgatgctggtttt
ggggctattgtggagaactgcaaggaattgcggcgactttcactttctggcctcctcacc
gatcgtgtctttgagtacattgggacccatgctaaaaagttggagatgctttccatagct
tttgctggtgatagcgatttgggactccaccatgtgctctctggttgtgatagtctccgg
aagttggagatcagagattgtccctttggggacaaggctgtcttggcgaatgctgcaaag
ctcgagacaatgcgatccctttggatgtcttcttgttcagtaagttttgaagcatgtaag
ctgctagctcagaagatgcctagacttaatgtggaagtcatagatgagaggggtcctccg
gatacaaggccagaaagttgccctgtggagaaactttacatatatcgaacagtggctgga
cggaggtttgacacacctggttatgtttggacaatggatgaagatgcagcagtgaggttg
tcctga
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