KEGG   Lycium barbarum (goji berry): 132609660
Entry
132609660         CDS       T09483                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
lbb  Lycium barbarum (goji berry)
Pathway
lbb03018  RNA degradation
lbb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lbb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    132609660
  09123 Folding, sorting and degradation
   03018 RNA degradation
    132609660
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lbb03019]
    132609660
   03041 Spliceosome [BR:lbb03041]
    132609660
Messenger RNA biogenesis [BR:lbb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     132609660
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     132609660
Spliceosome [BR:lbb03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    132609660
 Complex C
  U2 snRNP components
    132609660
SSDB
Motif
Pfam: LSM SM-ATX DUF150_C LSM14
Other DBs
NCBI-GeneID: 132609660
NCBI-ProteinID: XP_060179720
LinkDB
Position
9:20208026..20213573
AA seq 93 aa
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDEDKYPHMRSVRNC
FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgtttttctcatatttcaaggatctggtgggaagagaagtgactgtggaactgaag
aacgatttggctatccgaggaacactacattcagttgatcagtatctaaacattaagctt
gaaaacacgagggttgttgatgaggacaaatacccccacatgaggtcggtgaggaactgc
ttcatcagaggatcggtggtgagatacgtgcagttgcctccagatggagttgacatagaa
ttgcttcatgatgctacaaggagagaagctcgtggtggctga

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