Lycium barbarum (goji berry): 132609660
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Entry
132609660 CDS
T09483
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03018
RNA degradation
lbb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132609660
09123 Folding, sorting and degradation
03018 RNA degradation
132609660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132609660
03041 Spliceosome [BR:
lbb03041
]
132609660
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132609660
mRNA degradation factors
5'-3' decay
Lsm complex
132609660
Spliceosome [BR:
lbb03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
132609660
Complex C
U2 snRNP components
132609660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF150_C
LSM14
Motif
Other DBs
NCBI-GeneID:
132609660
NCBI-ProteinID:
XP_060179720
LinkDB
All DBs
Position
9:20208026..20213573
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AA seq
93 aa
AA seq
DB search
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDEDKYPHMRSVRNC
FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttttctcatatttcaaggatctggtgggaagagaagtgactgtggaactgaag
aacgatttggctatccgaggaacactacattcagttgatcagtatctaaacattaagctt
gaaaacacgagggttgttgatgaggacaaatacccccacatgaggtcggtgaggaactgc
ttcatcagaggatcggtggtgagatacgtgcagttgcctccagatggagttgacatagaa
ttgcttcatgatgctacaaggagagaagctcgtggtggctga
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