Lycium barbarum (goji berry): 132609847
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Entry
132609847 CDS
T09483
Name
(RefSeq) squalene synthase-like isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb00100
Steroid biosynthesis
lbb00909
Sesquiterpenoid and triterpenoid biosynthesis
lbb01100
Metabolic pathways
lbb01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
132609847
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
132609847
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
lbb01006
]
132609847
Enzymes [BR:
lbb01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
132609847
Prenyltransferases [BR:
lbb01006
]
Terpene biosynthesis
Squalene/phytoene synthase
132609847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Motif
Other DBs
NCBI-GeneID:
132609847
NCBI-ProteinID:
XP_060179996
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All DBs
Position
9:123599033..123619175
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AA seq
403 aa
AA seq
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MMGEIVRHPNELYPLMKLLVIAKRAEKETPSQPHLRFCYLMLRKISRSFSLVIQQLPLQL
RDAVCVFYLVLRALDTVEDDTSIATQVKVPILIAFHRHIYDHEWHFSCGINAYKDLMDQF
HHVSSAFLGLGKNYQEVIEDITMRMGEGMAKFVNKEIETIDDYEEYCHYVAGLAGLGLSK
LFHASGKEDLAPDSLPNAVGLFLQKTNIIRDYLEDINEVPKCRMYWPRQIWSKYVYKLED
LKLEENSGKAVQCLNDMVTNTLSHVEDCLVCLSTLRDPAIFRSCAIPQVMAIGTLAMCYN
NIKVFRGVVKMRRGLSAKVFDQTRTMADVYDAFSHFSCILKSKVDNNDPNATNTLKRIEA
IMRTCSDSGTLYKRNKPNYIPTLAVVFFVIVAILLPYLSAKRT
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgatgggagaaatagtgaggcatccgaatgagttatacccattgatgaagctcttagta
atagcaaaacgagcagaaaaagagactccttcacagccacacttgagattttgctatttg
atgctccgcaagatttctcgcagtttctctctcgtcattcaacagcttcccctccagctc
cgtgacgctgtatgcgtattctatttggttcttcgagcacttgacactgttgaggatgat
accagcatagcgacacaggtcaaagtacctattctcatagcttttcatcgtcacatttat
gatcatgaatggcatttttcatgtggtataaatgcctacaaggatctcatggaccaattc
catcatgtttcttctgcttttctggggcttggaaaaaattatcaggaggtgattgaggat
attactatgaggatgggtgaaggaatggctaaattcgtaaacaaggagattgaaacaatt
gatgattacgaggaatattgtcactatgtagctgggcttgcaggattaggcttgtcaaaa
cttttccatgcctctggtaaagaagatttagctccagattctcttcccaatgccgtgggc
ttatttcttcagaaaacaaatatcattagagattatttggaggacataaatgaagtaccc
aagtgtcgtatgtattggccccgtcaaatttggagtaaatatgtttacaaacttgaggac
ttgaagctcgaagaaaattcgggcaaggcagtacaatgtctcaatgacatggtcactaat
actttatcacatgtggaagattgtcttgtttgcctatccactttacgtgatccagctata
tttcgatcctgtgctattccacaggtcatggctattgggacattggcaatgtgctacaac
aatatcaaagtcttcagaggtgttgtaaaaatgagacgaggactcagtgctaaggttttt
gaccagaccaggacaatggcagatgtctacgatgctttttcacatttttcttgtattctg
aaatccaaggttgataataacgatccaaatgcaacaaatactttgaagcggattgaagca
attatgagaacttgcagtgactctggaaccttgtataaaaggaacaagcctaactacata
ccaactttggctgttgtctttttcgtcatagtggctattcttcttccctatctgtctgca
aaaagaacttag
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