Lycium barbarum (goji berry): 132610073
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Entry
132610073 CDS
T09483
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132610073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132610073
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
132610073
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
132610073
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GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
132610073
NCBI-ProteinID:
XP_060180307
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All DBs
Position
9:complement(20055540..20063384)
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AA seq
322 aa
AA seq
DB search
MRGIQLSFSNTQKLRLEKALESLSSKVNPNATVIVADTIPVDEDAALKGHGTLDMGKNVV
ATVCGVVERVNKLVYVRSLRARYKPEIGDIIVGRVIEVAPKRWRLEINFSQDAVLMLSSM
NLPDGIQRRRTAVDELNMRSIFVESDVICAEVRGFQHDGSLHLQARSQKYGKLERGKLLK
IPPYLVKRRKQHFHHLDQYGVDLIFGCNGFIWVGEHVEVKDAMVEDQVNKSDPQNANSAS
LLGSSEEQTYTPLETRQYICRIANAITVFSALCFMVNLEAVMETVTLSVSLNLGVHEMLE
AEFHVRVAEQEAERRSTSKRRK
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgagagggatacaattatctttcagcaacacacaaaagctaagattagagaaagcattg
gaatcactttcttcaaaggttaatcccaatgctactgtcattgttgctgacaccattcct
gttgacgaagatgctgccctcaagggacacggtacgttggatatgggcaagaatgtggta
gcaactgtgtgtggagtggttgagcgcgtgaacaagcttgtctatgttagatctttaagg
gccaggtacaagccagaaataggtgatattatagttggccgtgttattgaggttgctcca
aagagatggagattggaaattaatttcagccaagatgctgtactaatgctctcctcaatg
aatcttccagatggtattcagaggcggcgaacagcagttgatgaactcaatatgcgaagc
atatttgttgagagtgatgtcatttgtgctgaagttcgtggtttccagcatgatgggagt
ctacacctccaagctagaagccaaaagtatgggaagcttgaaagagggaaactactcaaa
atccctccatatctagtgaagaggcgtaaacagcatttccatcatctagatcagtatgga
gttgacttgatttttggctgcaatggatttatttgggttggggaacacgttgaagtaaaa
gatgccatggtagaggatcaagtaaataagtctgatccacaaaacgctaattcagcaagc
ttactgggttctagtgaagaacaaacttatacaccactggaaacaagacaatatatatgc
aggatagcaaatgccatcacggtattctctgctttatgcttcatggtcaatttggaggct
gtaatggagacggttaccttgagcgtatctttgaaccttggtgtacatgagatgcttgaa
gcagaattccatgttcgagttgctgagcaagaagctgaaagacggagcacatcaaaaaga
aggaaatag
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