Lycium barbarum (goji berry): 132610645
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Entry
132610645 CDS
T09483
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb00040
Pentose and glucuronate interconversions
lbb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
132610645
Enzymes [BR:
lbb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
132610645
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
DIM
Motif
Other DBs
NCBI-GeneID:
132610645
NCBI-ProteinID:
XP_060180947
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Position
9:22808451..22813949
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AA seq
440 aa
AA seq
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MAVYWSSYLSLCSLLVVMILVINATPGNSAEAAKQFQGLKNSTMANRLSEENVPNHEQHA
VDDPEMVASMVDMSIRNSTERRKLGFFSCGTGNPIDDCWRCDKNWQRNRKRLADCAIGFG
RNAIGGRDGKYYVVTDPNDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNS
FKTIDGRGVNVHIANGACITAQFVTNIIIHGINIHDCKPTGNAMVRSSPSHYGWRTIADG
DGISIFGSSHIWVDHNSLANCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRD
KIMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRYLA
PTNPFAKQVTHRVVQSEEWKHWNWRSEGDLMLNGAFFTPSGHGAASSYARASSLAAKASS
LVGTLTSNAGALTCRRGYQC
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggcagtttattggagctcgtatctctctctttgttcattgctagttgtgatgatatta
gtcatcaatgccactcctggtaacagtgctgaagcagcaaagcaatttcagggcttaaag
aactcgacaatggcgaacaggttaagtgaagaaaatgtaccaaaccatgaacaacatgct
gtagatgatccagaaatggtggcttcaatggtagacatgagcattaggaatagtacagag
aggaggaaattgggttttttctcatgtggaactggaaatcctattgatgattgctggcga
tgtgacaaaaattggcaacgtaaccgtaagcgtctagctgattgtgctattggctttgga
cgcaatgctattggtggtcgcgatggaaaatactatgttgtcactgatccaaatgatgac
gaccctgtaaatccccgacctggaacacttcgtcatgctgtaatccaggacagaccgttg
tggattgtatttaaacgcgatatggttattactcttaagcaagaactgattatgaacagt
ttcaagacaattgatggacgtggtgtgaatgttcatattgctaatggggcttgtataact
gcccaatttgttactaatattattattcatgggattaatattcatgattgtaaaccaacc
ggtaatgccatggttcgtagctcacctagtcattatggctggaggacaatagctgatggt
gatggcatttcaatttttgggtccagccatatttgggttgatcataactctcttgctaac
tgtgctgatggacttatcgatgctatcatgggatcaactgcaattaccatctccaacaat
tactttacacaccacaatgaggtgatgttattgggtcacagtgactcctatgttagagat
aagattatgcaggtgactattgcctacaaccattttggtgaggggctcattcagagaatg
cctaggtgtagacatggttatttccatgtagtgaacaatgactatacacattgggagatg
tatgccattggtggcagtgcttctcctacaattaacagccaagggaaccgatacctcgcc
ccaaccaacccttttgccaaacaggtgacacatagagtggtgcaatcagaagagtggaag
cattggaactggagatcagagggagaccttatgcttaatggagctttcttcaccccatcc
ggacatggcgctgcatccagttatgctagagcttcaagtttagcagccaaggcctcttcc
ctggttggcactcttacctcaaatgctggtgcacttacctgtcgccggggctaccaatgt
taa
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