Lycium barbarum (goji berry): 132611370
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Entry
132611370 CDS
T09483
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb00040
Pentose and glucuronate interconversions
lbb01100
Metabolic pathways
Module
lbb_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
132611370
Enzymes [BR:
lbb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
132611370
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
NosD
Beta_helix
DUF7460
DUF4834
Motif
Other DBs
NCBI-GeneID:
132611370
NCBI-ProteinID:
XP_060181784
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Position
9:complement(106734079..106739244)
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AA seq
393 aa
AA seq
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MSFLSLLPLLFIIFLFIIKLSLAASTMYNVQKYGAKSNGKTDSSKAFLSAWAAACASTSP
ATIYVPPGKYLVRSAYFYGQTCKSKAITIRIDGTVLAPSDYNVNGNAGNWIKFERVSGVS
IYGGTLDGQGSSLWACKNSGKSCPKGSTALAFYNSNNIVISGLTSQNSQMFHILLDGCHN
AKLQGVKVSAPVNSPNTDGIHLQSSSSITILNSHIGTGDDCVSIGPGNNNLWIENIACGP
GHGISIGSLGWDLQERGVQNVTVKTATFTGTENGVRVKTWARRSNGFVKDVLFQHAVMNN
VQNPIIINQNYCPSHENCPEQGSSVKISSITYQDIHGTSATEVAVKFDCSKKYPCSGIKM
QDVNLSYKHHSAEASCVNAGGRASGLQKPNSCL
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgagttttttgtctctcctcccacttcttttcattatcttcctctttataattaagtta
tcactagctgcaagtacaatgtacaatgtccaaaaatatggagccaaatccaatggcaaa
acagattcatccaaggcctttttaagtgcatgggctgcagcttgtgcttctactagcccg
gccactatatacgtgccaccgggtaaatatttggttcgtagcgcgtatttttatggccaa
acatgcaagagtaaggctattactatacgtattgatggaacagtcttagctccttctgat
tataatgtcaatgggaatgctggaaactggattaaatttgaaagagttagtggagtttcc
atctatggtggaacactagatggacaaggctcttctctgtgggcttgcaaaaactcaggc
aagagttgccctaaaggatctacggcattggctttttacaactcaaacaacattgttata
agcggattgacttcacaaaacagccaaatgttccacattttgttagacgggtgccataac
gccaagttacaaggagtgaaagtttcagctccagtaaacagccccaacaccgatggcatt
catttacagtcatcttccagcattaccatattgaattcccacatcggcacgggcgatgat
tgtgtgtcaattggccctggcaacaacaacttgtggatcgaaaacatcgcctgcggccct
ggccacggaataagcattggtagtttaggttgggatttgcaagagcgtggagttcaaaac
gtgacagttaaaactgctacatttactgggacagagaatggtgttagggtgaaaacttgg
gcaaggcgtagcaatggatttgttaaggatgttctttttcaacacgctgtaatgaacaat
gtccaaaatccaattatcatcaaccaaaattactgtccgagtcatgaaaattgccctgaa
cagggttcaagtgttaagattagtagcataacgtatcaagatatacatggaacttcggca
acagaagttgcagtcaaatttgattgtagcaaaaaatacccatgcagtggtataaaaatg
caagatgtgaatcttagttacaaacatcattcagctgaagcttcttgtgttaatgctgga
ggaagagcttctggtcttcaaaaacctaatagttgcttataa
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