Lycium barbarum (goji berry): 132612576
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Entry
132612576 CDS
T09483
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132612576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lbb03041
]
132612576
Spliceosome [BR:
lbb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
132612576
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_EIPR1
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_Vps41
Beta-prop_WDR19_1st
PRP4
Beta-prop_IFT122_1st
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_RIG_2nd
WD_LRWD1
Beta-prop_SCAP
eIF2A
Beta-prop_Nup120_160
Beta-prop_SPT8
Nbas_N
WD40_like
Motif
Other DBs
NCBI-GeneID:
132612576
NCBI-ProteinID:
XP_060182640
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All DBs
Position
10:complement(109865572..109876515)
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AA seq
577 aa
AA seq
DB search
MDAEDEIPVSTTDPSTVVGDSSTVVNTIGAINLTPVQPVAPPGVPTVNLPPGVPAIASRP
VVPTPIPPPLAPLPVRPPVLRPPVAQNGEVRASDSDSDLEEMGSDRGTADSAQEYEISAE
SKLARERQEKALQELLMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRM
LMAKLDAEGQLEKLMKAHEDEEAAASAAPAEEEDIQYPFYTEGSKALLDARVEIAKYSLV
KSALRLHRARRKRDDPDEDVDAEVDWALKQAGSLALDCSEIGDDRPLFGCSLSHDGKMLA
TCSMSGIAKIWSMPQVQKLSTLKGHTERATDVVFSPTSNHLATASADKTARLWNSEGSHL
RTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDVESGEELLLQEGHSRSVYGLSFHHD
GSLVASCGLDALVRVWDLRTGRSILALEGHVKPVLGVSFSPNGYHLASGGEDNTCRIWDL
RQRKSSYIIPAHSSLISQVKFEPQEGYFLATASYDMTAKVWSSRDFKPVKTLSGHEAKIM
SLDVASDGQFITTVSYDRTIKLWSSKNIQKDEKMDID
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggatgccgaggatgaaattcctgtttcaactacagatccttcgactgttgttggtgat
agttcgactgtggttaatactataggagcaattaatcttacaccagttcaacctgtcgct
ccaccgggcgttccaactgttaaccttccccctggtgtgcctgcaattgcttcaaggcct
gtagtccctacccctattcctcccccattagctccgttgcctgttcggccacctgtcctt
aggcctccggtagcacagaatggagaagttcgagcaagcgattcagattctgaccttgaa
gaaatgggatctgatcgtggcactgcagactcagctcaagaatatgagatatccgcagag
agcaaactagccagagagaggcaggaaaaagccttgcaagaacttctgatgaagaggcgt
gctgctgcactggcagtccctacaaatgatatggccgttcgggcccgccttcgaaggctt
ggtgaaccgataactctctttggagaaagggagatggaaagaagggaccgtctgcggatg
cttatggcaaagcttgatgcagaaggccagctggaaaagctgatgaaagctcatgaggat
gaagaagctgcagcttctgctgcacccgcagaggaggaggatattcagtaccctttttac
acagaaggatcaaaagcactgttagatgctagggtagaaatcgcaaagtattctttagtt
aagtcagctttacgtcttcatcgtgcaaggaggaaaagggatgatccagatgaagatgtg
gatgccgaggttgattgggctttgaagcaagcagggagcttggcccttgattgtagtgaa
attggagatgatcgacctcttttcggatgttcgctttcacacgacggaaagatgcttgca
acctgttctatgagtggtatagcaaagatatggagtatgcctcaagtgcaaaagctttcc
accctaaaaggtcacactgaacgagctactgatgttgtgttctctccgacaagcaatcat
ttagctactgcatctgctgacaagaccgctaggttatggaactcagaaggttctcacctc
agaacgtttgagggacatttggaccgtctagctcggattgcttttcatccttctggaaag
tacttgggcacagctagctttgacaaaacttggagattatgggatgtagagagtggtgaa
gagttgcttttgcaagaaggtcacagtaggagtgtttatggattgtcttttcaccatgac
ggttcattagtggcgtcatgcgggttggatgcacttgttcgagtgtgggacttaaggact
gggcgaagtatccttgctctagaaggtcatgttaaaccggttcttggtgtcagtttttct
cccaatggttatcatttggctagtggcggtgaagataatacctgtcgtatctgggactta
aggcagagaaaatcttcgtacatcatacctgctcactccagtcttatttctcaagttaag
tttgagcctcaggagggatactttttggctacagcttcctatgatatgactgccaaggtg
tggtcatcaagggatttcaagcctgtaaagacactatctggacatgaagcaaagatcatg
tcattggatgttgcgtcagatggacagttcatcactaccgtgtcgtacgatcgaacaatc
aagctgtggtcaagcaaaaacatccagaaggatgagaaaatggacattgactag
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