Lycium barbarum (goji berry): 132612579
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Entry
132612579 CDS
T09483
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03022
Basal transcription factors
lbb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
132612579
09124 Replication and repair
03420 Nucleotide excision repair
132612579
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbb03021
]
132612579
03400 DNA repair and recombination proteins [BR:
lbb03400
]
132612579
Transcription machinery [BR:
lbb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
132612579
DNA repair and recombination proteins [BR:
lbb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
132612579
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Zn_ribbon_GTF2H2
IBR
VWA
Motif
Other DBs
NCBI-GeneID:
132612579
NCBI-ProteinID:
XP_060182645
LinkDB
All DBs
Position
10:complement(27393832..27406924)
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AA seq
415 aa
AA seq
DB search
MNNEEKRFNREEEEEEEESGRGREAWERTYADERSWESLQEDESGLLRPIDNKTLSHAQY
RRRLRTATAARIQKGLIRYLYIIIDFSRAAAEMDYKPSRMVVVARQVEAFIREFFDQNPL
SQIGLVILKDGVAHCLTDLGGSPEAHIKALMGKLGTSGDASLQNGLDLVRDLLNQIPSYG
HREVLILYSALSTCDPGDILETIQKCKASKIRCSVIGLSAELYICKHLCQETGGMYFVAL
DEPHLKELVLEHAPPPPAIAEFAVANLIKMGFPQRAAEGVISICSCHKEAKVGGGYTCPR
CKARICELPTECCICGLTLVSSPHLARSYHHLFPIRPFDDISPSVLKDLHKLPKNCFGCQ
LSLLTPGNLPGPQVACPNCKQHFCLDCDIYIHESLHNCPGCESLRNSKTISDMEE
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatgaagaaaaacgatttaatcgagaagaagaggaggaggaggaggaaagtggg
agaggtcgagaagcttgggaaagaacttatgcagatgaaagatcatgggagtctttgcaa
gaggatgaatcaggactccttcgtccaattgacaacaaaactctatcccatgctcagtat
cgacggcgtctccgcactgcaaccgctgcacgaattcagaagggtctcattcggtatctc
tacattatcattgatttctccagggcagctgcagaaatggattataaaccaagccgaatg
gttgtagttgctagacaagtggaggcttttataagagaattttttgaccagaatccactg
agtcaaattggcttggtgatcttgaaagatggagtagctcattgtttaacagatcttggt
ggcagtcctgaggctcatatcaaagcattgatgggtaaattgggtacctcaggtgatgca
tccctccagaatggcttagatcttgtgcgtgatctcctaaatcaaatcccatcatatggt
catcgtgaagtccttatcctgtattcggctcttagcacatgtgatccgggggatatactg
gaaaccatccaaaagtgcaaagcgtctaagataaggtgctcagtaattggtctctctgca
gaactctacatatgcaagcatctctgccaagagactgggggaatgtattttgttgcattg
gatgagcctcatttaaaagagttggtattggagcatgccccacctcctccagctattgca
gagtttgctgttgcaaatttgatcaagatggggttcccccaaagagcagcagagggtgtg
atttcaatttgttcgtgtcataaagaggctaaagttggtggtggatacacttgtccgaga
tgcaaagcacgcatatgtgagctgcctactgaatgctgcatctgcggcctgaccctggta
tcttctccacatttggcaaggtcatatcaccatctcttcccaataaggccatttgatgac
atttcaccctcagttctgaaagatcttcacaagttaccaaagaattgctttggttgccaa
ctaagtctcctaactcctggaaatttgccaggtccacaggttgcttgtccaaactgcaaa
caacacttctgccttgattgtgatatttatatacatgagagcttgcacaattgtccaggt
tgtgagagcttaaggaattccaagaccattagtgatatggaagaataa
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