Lycium barbarum (goji berry): 132612614
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Entry
132612614 CDS
T09483
Name
(RefSeq) ubiquitin receptor RAD23c-like
KO
K10839
UV excision repair protein RAD23
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03420
Nucleotide excision repair
lbb04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
132612614
09124 Replication and repair
03420 Nucleotide excision repair
132612614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
lbb03051
]
132612614
03400 DNA repair and recombination proteins [BR:
lbb03400
]
132612614
Proteasome [BR:
lbb03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
132612614
DNA repair and recombination proteins [BR:
lbb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
132612614
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
Rad60-SLD
UBA_7
Rad60-SLD_2
UBA_RAD5A
TECR_N
Dsc3_N
CUE
Ubiquitin_2
UBA_3
Ubiquitin_4
NQRA_N
Motif
Other DBs
NCBI-GeneID:
132612614
NCBI-ProteinID:
XP_060182693
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Position
10:complement(103933831..103947285)
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AA seq
413 aa
AA seq
DB search
MKIFVKTLKGSHFEIQVKPEDTVADVKKNIETVQGSDVYPAAQQMLIHQGKVLKDGTTLE
ENKVGESNFIVVMLTKSKSSSGEGSATSTAATAKTPQSSTPAPSSTPASTAAQVPVASPA
AAPSPAPAAPSPAPVAPSPAPAAPSPAPAPAPASAPASTVVPGSDVYGQAASSLVAGNNL
DGAIQQILDMGGGTWDRETVVRALRAAFNNPERAVEYLYSGIPEAAEVPPVAGSPPSVQA
GNQPAAQPEPAAQPAPVPAGGPNADPLNLFPQGLPSVGSNTAGANTLDFLRNSQQFQALR
AMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPVEGGEGNNILGQLAGAMP
QAISVTPEEREAIERLEQMGFDHDLVLEVFFACNKNEELAANYLLDHMHEFEE
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgaagatatttgtgaaaacactcaaaggctctcactttgaaatccaagtcaaacctgaa
gacacggttgccgatgtgaagaagaacatagaaacggttcagggttcagatgtttatcct
gctgcccagcagatgcttatccaccaggggaaggtacttaaagatgggacaacactggaa
gaaaacaaagttggtgaaagcaactttatagtagtcatgctaacgaagagtaagagctca
tctggagaaggttcagcaacgtcaactgcagcaacagctaagacgccacagtcaagtacc
ccagcacctagttcaactcctgcatctacagctgctcaagtcccagttgcatcgcctgcg
gcggctccctcccctgcgccagcggctccctcccctgcgccggtggctccctccccagcg
ccagcggctccctccccagcgccagcccctgccccagcttctgctcctgcatcaactgtt
gtgccgggatctgatgtctatggccaagctgcttctagcttggttgctggtaacaacctt
gatggagcaattcagcagattcttgacatgggcggtggaacatgggatagggagacagtt
gttcgagccctacgggcagcttttaacaatcccgagagggctgttgaatacttgtactct
ggtatccctgaggcggcagaggttcctcctgttgccggaagtccacccagcgtgcaggca
ggaaatcagccggcggctcagccggaacctgcagcacaaccagcacctgtccctgcaggc
ggacccaatgctgatcctttgaatctctttcctcagggtcttcccagtgtgggatctaat
actgccggtgcaaacaccttagacttcctaaggaacagtcagcagttccaagctttacgg
gcgatggttcaggccaatccacagattttgcagcccatgcttcaggagctaggcaaacag
aatccccatctaatgaggcttatacaggagcatcaggctgattttcttcgccttatcaat
gagcctgttgaaggaggagaaggcaacaacatattgggccagcttgcaggagcaatgcca
caggctatatccgtaacacccgaagagcgtgaagccatagaacgtctagagcaaatgggc
tttgatcatgaccttgtactggaggttttctttgcctgcaacaaaaatgaagaacttgct
gctaactacctcttagatcacatgcacgagtttgaggagtga
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