Lycium barbarum (goji berry): 132613469
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Entry
132613469 CDS
T09483
Name
(RefSeq) serine/threonine-protein kinase VPS15 isoform X1
KO
K08333
phosphoinositide-3-kinase, regulatory subunit 4 [EC:
2.7.11.1
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
132613469
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
lbb01001
]
132613469
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lbb04131
]
132613469
Enzymes [BR:
lbb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
132613469
Protein kinases [BR:
lbb01001
]
Serine/threonine kinases: Other
VPS15 family
132613469
Membrane trafficking [BR:
lbb04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
132613469
Autophagy
Autophagosome formation proteins
PI3K complex
132613469
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS15-like_hel
Pkinase
WD40
Beta-prop_WDR5
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_WDR3_1st
HEAT
WD40_Prp19
WDR55
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
PK_Tyr_Ser-Thr
EIF3I
WDR90_beta-prop_4th
Beta-prop_EML_2
Beta-prop_TEP1_C
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_CAF1B_HIR1
PEP5_VPS11_N
WD40_Gbeta
Cohesin_HEAT
Beta-prop_Vps41
TCAD9
APH
Beta-prop_WDR41
Beta-prop_HPS5
Lipoprotein_15
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
132613469
NCBI-ProteinID:
XP_060183471
LinkDB
All DBs
Position
10:124580565..124590259
Genome browser
AA seq
1552 aa
AA seq
DB search
MGNKIAKTTQASAMEYYLHDLPSSYNLVLKEVLGRGRFLKSILCKHDEGLVLVKVYFKRG
DFIDLREYEHRLAKIRDIFTSLDHPHVWPFQFWLETDKAAYLLRQYFFNNLHDRLSTRPF
LCLVEKKWLAFQLLYAVKQSHEHGVCHGDIKCENVLVTSWNWLYLADFASFKPTYIPHDD
PSDFSFFFDTGGRRRCYLAPERFYEHGGEMHVAQDAPLKPSMDIFAVGCVIAELFLEGQP
LFELSQLLAYRRGQHDPSQLLEKIPDSGIRKMILHMIQLDPESRCSAESYLQNYAGVVFP
SYFSPFLHNFYSLLNPLNSDARVLICQTSFHEILKQMMSDKPGDRNPPAASRHSIPASQT
LQESNMNGNLCLVKDSLNNKEEIEKGSVHDRFDLLGNVNTLLRDVKQNNQCPVVKPVLED
IANTAYSQKQKQCHIRSPGEQVPVSSISFKRSHHPFLKKITMEDLTVLMSDYDNQSDTFG
MPFLPFPEDVMSCEGMVLIASLLCSCIRNVKLPFMRRSAVLLLNSCSLYIDDEDRLQRVL
PHVIAMLSDPAAIVRCAALETLCDVLPLVRDFPPSDAKIFPEYILPMLSMLPDDPEESVR
ICYASNISKLALTAYGFLIHSISLSEAGVLNETNSSQNSSISTSDQPVRPQSLNSDTQLA
QLRKSVAEVIQELVMGPKQTPNIRRALLQDIGNLCWFFGQRQSNDFLLPILPAFLNDRDE
QLRAVFYGQITYVCFFVGQRSVEEYLLPYIEQALTDTTEAVIVNALDCLAILCKSGFLRK
RVLLEMIDRSFHLLCYPSQWVRRSAVTFIAASSESLGAVDSYVFLVPVIRPFLRRQPASL
ASEKALFSCLKPPVSKELYCQLVENAKSSDMLERQRKIWYNSPPQSKQWETADLLDRSSS
ELDRLKYWPGRKHDFPGYKSASDLTKPIDFTDCDDSQTKVKAVGSLIQDPPSIMDSGDRL
PSEKLQLSGFVSPQVSGMSSFIDKSPEGIPLYYFKEDNKRSVGTGAAASDSSFPYNSFGF
GSSSLPWMDPVNKSFNLANSVPAPKLVSGSISIGNSSTLLRRVVHEVEDREADQTAYVNN
KFQDIASGKSKTGSLTMEDNTTATDRTDLSSFARTSMITDSGWRPRGVLVAHLQEHRSAV
NDISISADNSFFVSASDDSTVKVWDSKKLEKDISFRSRLTYSLEGSRALCVTVLQGSAQV
VVGACDGTIHVFSVDYISRGLGNVVEKYSGIADVKKNEVGEGAIASLLNYCSDGGASKMI
LYSTQNCGLHLLDTRTSSHAWNTKVYPKEGYISSLVAGPCGNWFVSGSSRGVLTLWDLRF
CIPVNTWQYSLACPIERMSLFVPPPSTSVSVAARPLVYVAAGCNEVSLWNAENGSCHQVL
RVANNENEAENSDLPWALAKPSNKANPKQELRRNTGSKYRLDELSDPPPRLSGIRALLPL
PGGDLLTGGTDLKIRRWDHCSPERSYCVCGPSIKGVVNDDFYETKSSFGVQIVQEAKRRP
LATKLTAKAILGAAAVDSAGCHRDCILSLASVKLNQRLLISGGREGAVKVWK
NT seq
4659 nt
NT seq
+upstream
nt +downstream
nt
atggggaataagatcgcgaaaacgacacaagcatcagcgatggagtattacctacacgat
ttgccttcatcatataatttagtgctgaaagaagtattaggacgaggtcgttttttgaaa
tcaattttgtgtaaacatgatgaaggacttgtccttgttaaagtttattttaaaagagga
gatttcattgatttaagggagtacgaacatcgtcttgccaaaattcgtgatatatttacc
tcacttgatcatccacatgtttggcctttccagttctggcttgaaacagataaagctgct
tatttgttgagacaatacttctttaacaatcttcatgatcgtcttagtactcgacctttc
ctctgtcttgttgagaagaaatggcttgctttccagttgctttatgcagtgaagcagagt
catgagcatggagtgtgtcatggtgatatcaagtgtgagaatgtgctggtcacatcttgg
aactggctttatcttgcggactttgcatcgttcaaacccacttatattccacatgatgat
ccttctgatttctcgttcttctttgataccggtggacgaaggcgatgctatcttgcacct
gagagattttatgagcatggaggtgagatgcacgttgcacaagatgctcctttgaagcca
tctatggacatctttgctgtcgggtgtgttattgctgagcttttcctcgagggtcagcca
ttatttgaattatctcaactgcttgcttatcgcagaggacaacacgatcccagtcaactt
ctggaaaagattccagattcaggaatccggaagatgattcttcatatgattcaattggac
ccagagtcacggtgttctgctgaaagctatctgcagaactatgcaggagttgtgttcccg
agctacttctcaccatttcttcataatttctattccttgttgaatccccttaattccgat
gcaagggttctgatatgccagacctctttccatgagatccttaaacaaatgatgagtgat
aagcctggtgacaggaaccccccggctgcgagtcgacattcaattcctgccagtcaaaca
ctgcaggagagtaatatgaacggaaatctgtgtttagtgaaggactcattgaacaacaaa
gaagagatagagaagggctcagttcatgatcgctttgatctgcttggcaatgtgaacact
ttgcttagggatgtgaaacaaaataatcaatgtcctgttgtgaagccagtgcttgaggat
atagccaatacagcatattcgcagaagcaaaaacaatgccacatccgatctccaggtgaa
caggtcccagtcagctccatttctttcaagagaagccaccatcccttcttaaaaaagatc
accatggaagatttgactgtgttgatgtctgactatgataatcagtcggacacttttgga
atgcctttcttaccatttcctgaagatgtaatgagctgtgaaggaatggtgctgatagcc
tcattgttgtgttcctgcatacgtaatgtcaaattgccttttatgaggagaagtgctgta
ttactgttgaactcttgctccttgtacattgatgacgaagatcggttgcagcgtgtactt
ccacatgtgatagcaatgctgtcggatccagcagcaattgttcgttgtgctgccttagaa
actttatgtgatgttcttcctttagttagagattttcctccaagtgacgccaaaatattt
cctgagtatattctccctatgctttccatgcttcctgatgacccagaggagagtgttagg
atttgttatgccagcaatatatcgaagcttgcactaactgcttatggttttctcattcac
tcaataagcttgagtgaggcaggtgtactaaatgaaacaaattcatcccagaattcatca
atatcaacctcagatcaaccagtacggccacagagtctaaacagtgatacacaacttgct
caattaaggaagtcagttgcggaggttattcaagagctcgtgatgggcccaaagcaaact
ccaaacatcaggagagcactattgcaagatattggtaacctttgttggttttttgggcag
aggcaaagtaatgacttcctgttgcccattctccctgcttttctaaatgatagagatgag
cagctcagggcagtattttatgggcaaatcacttatgtctgtttttttgttggacaaaga
agtgtggaagaatatcttttaccgtacattgagcaggctttgactgatacaactgaggcc
gtaatcgtcaatgcactagattgcttggccattctctgcaaaagtggctttctgcgcaag
cgggtcctacttgagatgatagaccgttctttccatttgttgtgctaccctagccaatgg
gtaaggaggtcagctgtaacctttattgccgccagcagtgagagcttaggagcagttgat
tcttatgtttttcttgtcccagtaataaggcccttccttcgcaggcagccagcatctcta
gcttcagagaaagcccttttctcatgcctgaagccaccagtttcaaaagaactgtactgt
cagcttgtggaaaatgcaaagagttcagatatgctcgagcgacaaagaaagatatggtac
aattcaccacctcagtcaaaacaatgggaaactgcagatttacttgacagaagtagcagt
gagttggatcgactgaaatactggcctgggaggaaacatgatttcccgggctataaatct
gctagtgatttaacaaaaccaattgattttactgattgtgatgatagtcagaccaaggtg
aaagctgtgggaagcttaatacaagatcctcctagcataatggatagcggggatcgcctc
ccctctgaaaaattacagctatctggctttgtgtccccacaagtcagtggtatgagcagc
tttattgataaatcacctgaaggaattcctttgtactattttaaggaggataacaagaga
tcagtaggcactggtgcagcagcttctgattcctcatttccatataattcatttggattt
ggatcttcgtctttgccttggatggatcctgtgaacaagtcatttaacttggcaaattct
gttccagcacctaagcttgtgtcaggttcaataagcattggcaatagttccactctgttg
cggagagttgtacatgaagtggaagacagggaagctgatcaaacagcatatgtgaataac
aagtttcaggacattgcatctggtaaatctaaaacgggttccctaacaatggaagacaac
acaaccgcaacagatagaactgatttatcatcttttgccagaacatctatgattactgat
tcaggatggaggcctcgtggggttttggttgctcacctccaagagcaccgttctgctgtt
aatgatatatccatttcagcggacaacagcttttttgttagcgcatctgacgattctact
gttaaggtttgggattcaaaaaagctggagaaggatatctcattcaggtcaaggttaact
tattctttagaaggaagccgagctttatgcgttacagtgctccaaggttctgctcaagtt
gttgttggagcatgtgatggaacaatacatgtgttctctgttgattatatctcccgagga
ctcggtaatgttgtcgagaagtattctggtattgctgatgtgaaaaagaatgaagtggga
gagggtgccattgcaagcctcttgaactattgttcagatggtggtgcctcaaaaatgatt
ttgtacagcacccagaattgtgggctccatctgttggacacaagaacaagctcacatgcc
tggaacaccaaggtttatccgaaagagggctatatatcatctctagttgcagggccttgt
ggaaactggtttgtatcaggttcatcaagaggtgtacttacactttgggatttgaggttc
tgcataccagttaacacatggcaatattctcttgcctgcccaattgagagaatgtctctc
tttgttcctcctcctagtacctcagtgtctgtagcggctaggccccttgtttatgttgca
gcaggttgtaatgaagtctctctctggaatgcagagaatgggagctgccaccaggttttg
agggtagcaaacaatgagaatgaggctgagaactctgacctaccttgggctttagcgaag
ccatcaaataaggctaatcctaaacaagaactaagaagaaatactggttcaaagtaccga
cttgatgaattgagtgatccgcctcctcgcctttctggcattcgggcattgcttccatta
cctggtggtgatttgttaacagggggtactgacttaaaaatacgtcgctgggaccattgc
agcccggaacgaagttattgtgtttgcggaccatctataaagggggttgttaatgatgac
ttttatgagacaaaatctagctttggcgtacaaatagtgcaggaggcaaagaggcgacct
ttagccaccaaattaacggcaaaggcaatccttggagctgctgctgttgattccgctggg
tgtcaccgtgattgtattctctctttggcttctgtaaaattaaatcagagacttctgata
tcaggcggtagagagggagctgttaaggtttggaagtaa
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integrated database retrieval system
