Lycium barbarum (goji berry): 132613658
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Entry
132613658 CDS
T09483
Name
(RefSeq) zinc finger CCCH domain-containing protein 49-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132613658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lbb03041
]
132613658
Spliceosome [BR:
lbb03041
]
Complex B
Other components
Prp19-related factors
132613658
Complex C
132613658
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_10
zf-CCCH_12
RRM_3
zf-CCCH_3
zf-CCCH
RRM_occluded
RRM_YTH1
zf-CCCH_4
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
132613658
NCBI-ProteinID:
XP_060183766
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All DBs
Position
10:112343824..112350865
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AA seq
479 aa
AA seq
DB search
MAHRLLRDAEADGWERSDFPIICESCLGDSPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAE
EHDRRARAGIDYESSYGKVRANDTILKLQRTTPYYKRNRAHVCSFYIRGQCTRGLECPYR
HEMPETGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPDDESIRTLYVGGVDARVS
EQDLKDQFYAHGEIESVKMVLQRGCAFVTYTTREGAEKAAEELANKLVIKGLRLKLLWGR
PQAPKAEIEMSDEARQQVTHSGLLPRAVISQQQNQLPPPPGTQEQPPQPMQYFNIPPMPQ
QERAYYPSMDPQRMGAVVPSQEGASSSASGSGPENKSGSEKQPQGQHYAYPPAPPPQGQF
YPPYYPPPPYGYMPPPPPPHYQQYPPPYQATRPPPPPSAGDQAAYQQKPQPAVAAAQPP
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggcgcataggttgcttcgagatgcagaagcagatggatgggaacgatctgatttcccc
attatttgtgagtcttgtcttggtgatagtccctatgttagaatgacgaaagcagattat
gacaaggagtgcaagatatgcacacgacccttcacagtgttcagatggaggcctggtcgg
gatgcaagatacaaaaaatctgagatctgtcagacctgcagcaagttgaagaatgtttgt
caagtttgtcttttggatcttgagtatggtttgccagttcaggtccgggacactgctctc
agtatcaattctaatgattcaattcccaagagtgacgttaatagagaatattttgccgag
gagcatgaccgcagggcaagggcagggattgattatgaatcttcatatgggaaagtccgt
gcaaatgacactattttgaagctccaaagaacaactccatactacaagagaaatcgggca
catgtttgcagtttctatatacgtggtcaatgcacaagaggtttggagtgcccttacagg
catgagatgcctgagaccggggagttgtcacagcaaaacattaaggaccgttactatgga
gttaatgatcctgtggctatgaagctacttaataaggcaggtgaaatgccttcattagag
ccccctgatgacgagagcattagaaccctctatgtgggtggtgttgatgcaagagtcagt
gagcaggacctaaaggaccagttttacgcacatggagaaatcgagtctgttaaaatggtg
ttgcagcgtggttgtgcttttgtaacctacactacaagagaaggtgcagagaaagcggct
gaggaactagcaaacaagctagtgataaagggcttgagactgaagctgctctgggggaga
ccacaagctcctaaagcagagatcgagatgtctgatgaagcaagacagcaagtgactcat
agtggattgttgcccagagctgtcatatcacaacagcagaatcagcttcctccaccccca
ggcactcaggaacaacccccacaaccaatgcaatacttcaacattccgccaatgcctcag
caggaaagagcatattatccgtcaatggatcctcaaaggatgggtgccgttgttccatct
caggagggagcttctagttcagcttcagggtcggggcctgaaaacaagagtggttctgaa
aaacagccacaaggacagcattatgcatatccaccggcacctccacctcaaggtcaattt
tacccgccttactatccgccaccaccctatgggtatatgccaccaccaccgcctccacat
tatcagcagtatcccccgccttatcaagctacgagaccacctcccccaccttctgccggt
gaccaagctgcttatcagcagaagcctcaaccagcagtagcagcagcacaaccaccttaa
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