Lycium barbarum (goji berry): 132613766
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Entry
132613766 CDS
T09483
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 27 isoform X1
KO
K11851
ubiquitin carboxyl-terminal hydrolase 30 [EC:
3.4.19.12
]
Organism
lbb
Lycium barbarum (goji berry)
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lbb01002
]
132613766
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lbb04131
]
132613766
04121 Ubiquitin system [BR:
lbb04121
]
132613766
Enzymes [BR:
lbb01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
132613766
Peptidases and inhibitors [BR:
lbb01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
132613766
Membrane trafficking [BR:
lbb04131
]
Autophagy
Mitophagy
Other mitophagy associated proteins
132613766
Ubiquitin system [BR:
lbb04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
132613766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
132613766
NCBI-ProteinID:
XP_060183967
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All DBs
Position
10:19829823..19842694
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AA seq
573 aa
AA seq
DB search
MKINGNIDSYSLMYKFKHGFKSHWVTAHGVQVSVVATLLSIAGFIFAIKDGKLRNIMVSQ
KHSSKNYWIIPGLQNLGNNCFLNVVLQALASCKSFSKYLEQVVEEYEGPSKEGSEDLPVV
STLALLIEELSIARHGRAVLSPRRLMHAMTSHIPNFNLTSQQDAEEALSHLISSLRAELS
ESYVHDHSSLADVTTLPNCRIVTQRKAGESEQERWKQSFLGPFDGILGSFLTCQSCSFQI
SLDFQLFHSLHLVPVSSSSGAIMPGCSVEHCLKQFFVAEQLENYKCSHCWHIAAIKFVSA
MDENEAVVEKLKLCNEEDSCDCKELACLARLPWSNSFSRTFKQLSIGRSPKVLCLHLQRA
SINVFGEQVKLQGHISFPLILDLAPFVKNGVGTKSREENLQIGQIKQQQQPFPLFNYLNL
NDNKGMLTCITRSEREFFEVDDTADLCLSNSFGVKAPKSKSSLLETGGYKETSLNQPPPH
SGNQGGASPIPPFKSHKYRLASVVQHFGIVGSGHYTVYRRVTAKISEDDPAGLLGSAVDQ
WFCISDTDVHSVSEKDVLDAEATLLFYEKVSDC
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattaatggaaatatagactcttattcacttatgtacaaattcaaacatgggttt
aagtcccattgggttactgctcatggtgttcaagtctcagttgttgcaactctacttagt
attgctggttttatatttgcaataaaagatggtaaacttagaaacatcatggtatcacag
aaacatagttcaaaaaactattggattatacctggattgcaaaatcttggaaataattgc
ttcttgaatgttgttttacaggcgttagctagctgtaagagctttagcaaatatcttgag
caagttgtggaggaatatgagggtccatcaaaggaaggaagtgaagatttgccagttgtt
tctactttggctttgctcatagaagaattaagtatagcgcgacatggacgagctgttctc
agtccaaggagattgatgcatgccatgactagtcacattcctaatttcaatctaactagc
cagcaggatgcagaggaagcactctcccatcttatatcttctttaagagccgaattgtca
gaatcttatgttcatgatcacagttctttggcggatgtaactacgcttcctaattgtagg
attgttacacaaaggaaggcaggagaaagtgaacaggagagatggaagcaaagttttctt
gggcctttcgatgggattcttggtagctttttaacctgccaaagttgttcgtttcagatc
tctctggattttcagttgtttcatagtttgcatcttgttccagtgtcaagcagcagtggg
gctattatgcctgggtgttccgtggagcattgcctgaagcagttctttgtcgcagaacaa
cttgaaaactataagtgcagccactgttggcatattgcggccataaagtttgtctctgca
atggatgaaaatgaggctgttgttgaaaaacttaagctgtgcaacgaggaagattcgtgt
gattgcaaagagctagcttgccttgctcgattaccatggtcaaatagcttctcacgcact
ttcaagcaactcagtattggccggagtcctaaggttctatgtcttcatttacaacgcgct
tcgataaatgtattcggggaacaggtcaaacttcagggccatatttcatttccgttgatt
ttggacttggctcccttcgtgaagaatggagtgggaacaaagagtcgggaagagaatctg
caaatcgggcaaataaagcagcagcagcagcctttccctttgttcaattacttaaatctg
aatgataataagggcatgttaacttgcattacccgaagtgagagagagttttttgaagta
gacgatacggctgatttgtgtctctcaaatagttttggtgttaaagcaccaaagtcaaaa
tcaagtttgctcgagactggaggctacaaggagaccagcttaaatcagccgcctccacat
tctggcaatcagggtggagcttccccaataccacctttcaaaagtcacaagtaccgacta
gcctctgtggtgcagcactttggaatagttggtagtgggcattacactgtttacagacga
gtgactgccaaaattagtgaagacgatcctgcaggactactgggatcagctgttgatcag
tggttttgcatctcagacaccgacgtgcacagtgtttctgagaaagatgttcttgatgct
gaagcaaccttactgttctatgagaaagtttctgattgttaa
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