Lycium barbarum (goji berry): 132613794
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Entry
132613794 CDS
T09483
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132613794
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132613794
03012 Translation factors [BR:
lbb03012
]
132613794
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132613794
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
132613794
Translation factors [BR:
lbb03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
132613794
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
nSTAND3
AAA_22
AAA_19
Dicer_dimer
ATPase
AAA_11
NACHT
T2SSE
PhoH
ABC_tran
Myosin_head
Motif
Other DBs
NCBI-GeneID:
132613794
NCBI-ProteinID:
XP_060184007
LinkDB
All DBs
Position
10:106484673..106505035
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AA seq
1172 aa
AA seq
DB search
MSLYYPLQFLSYNSHYNKPYTIPMKERPLSSCGGAVYVPPHQRLRSVITASPQPGGLRPI
TAIDQKPNNNNNNSNSIKSYPYLPPPQQQQVRLQNKRSSRFDEDIHLTPYQGAAPSDNAE
AWKWKLTALLHNNDKQEVISREKKDRRDYEQIAALASKMGLYSKLYSKVVVVSKLPLPNY
RFDLDDKRPQREVILPPGLPRRVDVFLGQYLSLKPTSMSRSSSNGSIATDEGLFEQLEAL
PQSKTAMKKILWERSMQMQTKQQTWQESAEGKKMLEFRSSLPAYKEKDAMLSAISQNQVV
IISGETGCGKTTQIPQFILESEIESVRGDMCSIICTQPRRISVMAVSERVAAERGEVLGE
TVGYKVRLEGVKGRDTHLLFCTTGILLRRLLVDRNLKGITHVIVDEIHERGMNEDFLLIV
LKDLLPRRPELRLILMSATLDSELFSSYFDGAPLVHIPGFTHPVRTHFLEDILEMSGYRL
TPDNQIDDYGQERVWKMNKQAPRKRKSQIASAVEDTLRAADFQEFSPETQESLSCWNPDC
IGFNFIEYILCHICENERPGAVLVFMTGWDDISSLKDKLQCHPILGNTSRVLLLACHGSM
ASTEQRLIFDKPEAGVRKIVLATNIAETSITIDDVVFVIDCGKAKETSYDALNNTPRLLP
SWISKVSAQQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPEILRTPLQSLCLQIKSLKL
GSISEFLSRALQSPELLAVQNAIEYLKIIGALDESENLTVLGRYLTMLPMEPKLGKMLIL
GAILNCLDPILTIVAGLSVRDPFLTPLDKKDLAEAAKAHFSRDFSDHLALVRAYEGWRDA
ERDLAGYEYCWKNFLSAQSMKAIDSLRGEFYSLLNETGLVDSNITIYNSWSYDEHLLRAI
ICYGLYPGICSVLHNEKSFSLKTMEDGQVFLHSNSVNARDSRIPYPWLVFNEKIKVNSVF
LRDSTAISDSVLLLFGGAISKGEVDGHLKMLGGYLEFFMSPTIAEMYTSLRRELDELIQT
KLLNPRMDVHSYHELLSAVRLLISEDQCDGRFVFSRQILLPSKPGAGALPPAQMSRTESG
PGGDNAKSQLQTLLNRAGYATPTYKTVQLNNSQFRATVEFNGVQIMGRPCNNKKQAEKDA
AAEALNWLLEGHRAGPNYIEQMSQLLKKSKKA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgagcctatattatccactccagtttctctcatacaattcacattataataaaccctac
accattccgatgaaggaacggccgttatcgtcatgtggtggcgccgtttacgtacctcca
caccaacgcctccgttcagtaatcacagcttctccacaacctggtggcttacgtcctatt
acagcaattgatcaaaaacctaataataataataataattctaatagtatcaagtcttac
ccttacttgccgccacctcagcagcaacaagtgagattgcagaataaaagaagttctcga
tttgatgaggatattcaccttacaccttatcagggtgctgccccatctgacaatgctgaa
gcatggaaatggaagctcactgctctgttacacaacaatgataaacaagaggtgatctca
agggagaaaaaggataggcgggattatgagcaaatagcagctttagcaagcaaaatgggt
ttatatagcaagctatattcaaaagtagtagttgtcagcaagcttccattacctaactac
agatttgatttggatgataagcgtcctcagagagaggtcatcctgcctccgggtttacca
agacgagtagatgtttttcttggacaatacttgtctcttaagccaacgagcatgtcacga
tcaagcagtaatggcagtatagctactgacgagggtctatttgagcagttagaggcactc
cctcagagtaagactgccatgaagaaaatcctttgggaaaggagtatgcaaatgcaaaca
aagcagcaaacttggcaggaatcagctgagggtaagaagatgctggaatttcgtagtagc
ctacctgcatataaggaaaaagacgcaatgttaagtgccatttcacagaaccaggtggtt
attatctcaggtgaaactggctgtgggaagaccacacagattccccagtttattttagag
tctgaaattgagtccgttcgtggagacatgtgcagtatcatatgtactcagccaagaaga
atatctgttatggcagtatctgaaagagttgctgctgagagaggggaggttttgggtgaa
acggttggatataaagttaggctagaaggtgttaaaggaagggacactcacctcctcttt
tgtaccactggtatcttgttgagaagactactagttgatagaaatctgaagggcatcaca
catgtaattgtggacgagattcatgaacgtggaatgaatgaagactttctgctaatagtt
ctaaaggatttactccctcgccggccagagttgaggttgattttgatgagtgccacctta
gattcagagcttttctcttcatactttgatggggctccactggtccacattccgggattt
acacatccagttcgtactcatttcctggaagatattctggagatgtcggggtacaggtta
acgccggacaatcagattgatgattatggtcaggagagagtgtggaaaatgaacaagcaa
gctccaagaaaaaggaagagccagattgcgtctgctgttgaggacaccctcagagctgct
gatttccaagaatttagccctgagacacaggagtctttgtcttgttggaatccagattgt
ataggcttcaattttatagaatatattctatgccatatttgtgaaaatgaaaggcctggt
gctgttttagtttttatgactggctgggacgacataagttctttgaaggataagctacaa
tgtcatcctatcttggggaatacaagccgtgttttgttgctggcatgccatggttctatg
gctagtacagagcagaggttaatatttgacaagcctgaagctggagtgaggaagattgtg
ttggctacaaatattgccgaaaccagtatcacaattgatgatgtagtttttgttatcgac
tgtgggaaggcaaaagagacatcgtatgatgcacttaataatactcctcgtttgcttcct
tcttggatttcaaaggtttcagctcaacagagaaggggacgagccggacgtgttcagcct
ggagaatgctatcatctttatcccagatgtgtatatgatgcttttgcagattatcaatta
ccagaaattctgaggactcctttgcaatccctttgtttgcaaatcaaaagtttaaaactc
ggtagcatttctgagttcctctcgagggctttgcagtcccctgagttattagcggttcaa
aatgccattgagtatctgaaaatcattggggctttagatgagagtgaaaatttgactgtt
ctaggacgttacttaacaatgcttccaatggagcctaaactcggaaaaatgcttatactt
ggggctattttgaattgtttggacccgatattaactatcgttgctggtcttagtgtccga
gatcccttcttgacaccgcttgacaagaaagatcttgcagaggctgctaaggctcatttt
tcacgtgattttagtgaccatcttgctcttgttcgagcatatgagggttggagggatgct
gaaagagacctagctggatatgagtactgctggaaaaatttcctgtctgcacagtctatg
aaagctattgattcccttcgcggggagttttactctttgctgaatgagactggtcttgtt
gacagcaacattaccatatataattcttggagttatgacgagcatctccttcgagcgatt
atctgctacgggttgtatcctggaatctgttctgtactgcataatgaaaagtcgttttcc
ttgaaaacaatggaagatggtcaggtgtttttacactcgaactctgttaatgcccgggac
tccaggataccatatccatggctcgttttcaatgaaaagataaaagtaaactctgttttt
ctccgggattctacagctatctccgactcagtgctgcttctatttggaggagccatctca
aaaggggaagtggacggtcacttgaaaatgttgggtggatacttagagttctttatgagc
cctactatagcagaaatgtacacaagtctaagaagagagcttgacgagttaattcagact
aaactcctgaatcctaggatggatgtacatagttatcatgaacttctgtcagcagtgcgg
ttgcttatctcagaggatcaatgcgatggcagattcgtttttagtcgtcagattttactt
ccttccaagccaggtgctggagcactaccgccagctcaaatgtcaaggacagaaagtggt
ccaggaggtgacaatgctaagtctcagctacagacgttgctgaatcgagcaggatatgca
acaccaacctacaagacagtgcaacttaataacagtcagtttcgagcaactgtggagttc
aatggagtgcagataatgggacgaccttgcaacaacaaaaagcaagctgaaaaagatgca
gcagctgaggctctgaactggttgttggaagggcaccgtgcaggtcctaattacatcgag
cagatgtcacagttactgaaaaagagcaagaaagcatag
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integrated database retrieval system
