Lycium barbarum (goji berry): 132613932
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Entry
132613932 CDS
T09483
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132613932
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lbb03041
]
132613932
Spliceosome [BR:
lbb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
132613932
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
ANAPC4_WD40
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_Vps41
PRP4
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_RIG_2nd
WD40_RFWD3
WD_LRWD1
Beta-prop_SCAP
eIF2A
Beta-prop_SPT8
Nbas_N
WD40_like
Motif
Other DBs
NCBI-GeneID:
132613932
NCBI-ProteinID:
XP_060184214
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Position
10:112064078..112069212
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AA seq
592 aa
AA seq
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MCVRRGVSLIVNFWGMDAEDERPVSTTDPSTVVGDSSTVVNAIGAINLTPVQAVAPPGVP
TVTPPPGVPAIAPRPAVPTPIPPPLAPLPVRPPVLRPPVAQNGEVRASDSDSDLEEMGSD
RGTADSAQEYEISAESKLARERQEKALQELLMKRRAAALAVPTNDMAVRARLRRLGEPIT
LFGEREMERRDRLRMLMAKLDAEGQLEKLMKAHEDEEAAASAAPAEEEDIQYPFYTEGSK
ALLDARVEIAKYSLVKSALRLHRARRKRDDPDEDVDAEVDWALKQAGSLALDCSEIGDDR
PLFGCSLSHDGKMLATCSMSGIAKIWSMPQVQKVSTLKGHTERATDVVFSPTSNHLVTAS
ADKTARLWNSEGSHLRTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDVESGEELLLQ
EGHSRSVYGLSFHHDGSLVASCGLDALVRVWDLRTGRSILALEGHVKPVLGVSFSPNGYH
LASGGEDNTCRIWDLRQRKSSYIIPAHSSLISQVKFEPQEGYFLATASYDMTAKVWSSRD
FKPVKTLSGHEAKIMSLDVAADGQFITTVSYDRTIKLWSSKNIQKDEKMDID
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgtaagaagaggggtttctctaatagtaaatttttggggtatggatgccgaggat
gaaaggcctgtttcaactacagatccttcgactgttgttggtgatagttcgactgtggtt
aatgctataggagcaattaatcttacaccagttcaagctgtcgctccaccgggcgttcca
actgttactcctcctcctggtgtgcctgcaattgctccaaggcctgcagtccctacccct
attcctcccccattagctccgttgcctgttcgtccacctgtccttaggcctccggtagca
cagaatggagaagttcgagcaagcgattcagattctgatcttgaagaaatgggatctgat
cgtggcactgcagattcagctcaagaatatgagatatctgcagagagcaaactagccaga
gagaggcaggaaaaagccttgcaagaacttctgatgaagaggcgtgctgctgcactggca
gtccctactaatgatatggctgttcgggcccgccttcgaaggcttggtgaacctataact
ctctttggagaaagggagatggaaagaagggaccgtctgcggatgcttatggcaaagctt
gatgcagaaggccagttggaaaagctgatgaaagctcacgaggatgaagaagctgcagct
tctgctgcacctgcagaggaggaggatattcagtaccctttttacacagaaggatcaaaa
gcactgttagatgctagggtagaaatcgcaaagtattctttagttaagtcagctttacgt
cttcatcgcgcaaggaggaaaagggatgatccagatgaagatgtggatgccgaggttgat
tgggctttgaagcaagcagggagcttggcccttgattgtagtgaaattggagacgatcga
ccccttttcggatgttcgctctcacacgacggaaagatgcttgcaacctgttctatgagt
ggtatagcaaagatatggagtatgcctcaagtgcaaaaggtttccaccctaaaaggtcac
acagaacgagctactgatgttgtgttctctccgacaagcaatcatttagttactgcttct
gctgacaagaccgcaaggttatggaactcagaaggttctcacctcagaacgtttgaggga
catttggaccgtctagctcggattgcttttcatccttctggaaagtacttgggcacagct
agctttgacaaaacttggagattatgggatgtagagagtggtgaagagttgcttttgcaa
gaaggtcacagtaggagtgtttatggattgtcttttcaccatgacggttcattagtcgca
tcatgcgggttggatgcacttgttcgagtgtgggacttaaggactggacgaagtatcctt
gctctagaaggccatgttaaaccggttcttggtgtcagtttttctcccaatggttatcat
ttggctagtggcggtgaagataatacctgtcgtatctgggacttaaggcagagaaaatct
tcgtacatcataccggctcactccagtcttatctctcaagttaagtttgaacctcaggag
ggatactttttggctacagcttcctatgatatgactgctaaggtatggtcatcaagggat
ttcaagcctgtaaagacactatctggacatgaagcaaagattatgtcattggatgttgcg
gcagatggacagttcatcactactgtgtcgtatgatcgaacaatcaagctgtggtcaagc
aaaaacatccagaaggatgagaaaatggacattgactag
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