Lycium barbarum (goji berry): 132614355
Help
Entry
132614355 CDS
T09483
Name
(RefSeq) probable pectate lyase 13 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb00040
Pentose and glucuronate interconversions
lbb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
132614355
Enzymes [BR:
lbb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
132614355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
WSS_VP
Baculo_gp64
Motif
Other DBs
NCBI-GeneID:
132614355
NCBI-ProteinID:
XP_060184764
LinkDB
All DBs
Position
10:complement(8921392..8931966)
Genome browser
AA seq
495 aa
AA seq
DB search
MFFIRFWARLIRLHTRKSYIGGKTIYQRRLNNEGSNSRFMIKNERVLTWKVNESISRREL
LDTTTNAQCQTGNPIDDCWRCDPNWSKNRQSLADCAIGFGQGAIGGKNGKYYVVTDSSDR
DTVDPTPGTLRHAVIQEEPLWIIFAADMSITLKHELIVNSYKTIDGRGAKVHITGNGCIT
LQSISNVIIHNIHIYDCKPSGNTEIRSSPTHVGHRGISDGDGISIFDSRNIWIDHCALSH
CTDGLIDAIMGSTAITISNSYFTHHDEVMLLGHDDKYTPDTGMQVTIAFNHFGVGLVQRM
PRCRRGYIHVVNNDFTEWQMYAIGGSANPTINSQGNRYTAPVDANAKEVTKRVDTDEGEW
SGWNWRTDGDVMVNGAFFVPSGQGLSSQYAKASSVEPKSAVIIDQLTLNAGVFGAPRDNG
ISISYGGGTTTGGSGSGGGGGRDDSDFFGMIFGNGASPKLSPTTTMLLSLLIIFVLYITT
NHGGQFSLQLLLLLL
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgttttttatccgtttttgggctcgactaattcgacttcacactaggaagtcctacatt
ggcggtaaaactatctaccaaaggcgactcaataatgagggctcgaactcgagatttatg
attaagaatgaaagagtacttacgtggaaggtgaacgaatcgatttcaagaagagaactc
ttagacaccaccacaaatgcacaatgtcaaacaggcaacccgatagacgattgctggcgc
tgcgacccaaattggtcaaaaaatcgacagagcctagcagattgcgccataggctttggc
cagggcgcaatcgggggtaaaaatggaaagtactacgtcgtaacggattcctcggaccga
gacactgtggaccccactccaggcaccctcagacacgctgttatccaagaagaaccactt
tggatcatatttgcagcagacatgtccattacattaaaacacgaacttatagtaaatagt
tacaaaacaattgatggtcgtggagcaaaagttcatattactggtaacggttgtataacg
ttgcagtctattagtaacgtgatcatacataatattcatatatacgattgtaagccttcg
gggaatactgagatacggtctagtccaacacatgttggacatagaggaatatcggacggt
gatgggatatcgatatttgattcaaggaatatatggattgatcattgtgctttgtctcac
tgtactgatggcttaattgatgctataatgggatctacggctattactatttcgaatagt
tattttactcatcatgatgaagttatgctcttgggacatgatgataaatacacgcctgac
accggaatgcaggtgacaatagcattcaatcattttggagtagggttagtacagagaatg
ccaaggtgtagaagaggttacatacatgtagtgaacaatgattttacagaatggcaaatg
tatgcaattggaggaagtgctaatcctactattaacagtcaaggcaatcgctatactgcg
ccagttgatgcaaatgcaaaagaggtaacaaagcgcgtggatacagacgagggtgagtgg
agtgggtggaactggagaacagatggggatgtaatggtaaatggagcattttttgtgcca
tcaggtcaaggattgagcagccaatacgcgaaagcctcgagcgtggagcccaaatccgct
gttattattgaccaacttactcttaatgctggtgtttttggtgccccaagggataatggt
atcagcatatcatatggaggagggaccaccaccggaggtagcgggagcggaggcggtggc
ggcagagatgatagtgacttctttggaatgatatttgggaacggcgcatcaccgaaatta
tcaccaaccactactatgttattgtctcttttaattatttttgttttgtacattaccacc
aaccatggtgggcaattttcattgcaattattattactcttactatag
DBGET
integrated database retrieval system
