Lycium barbarum (goji berry): 132614423
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Entry
132614423 CDS
T09483
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132614423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbb03021
]
132614423
03041 Spliceosome [BR:
lbb03041
]
132614423
03036 Chromosome and associated proteins [BR:
lbb03036
]
132614423
Transcription machinery [BR:
lbb03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
132614423
Spliceosome [BR:
lbb03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
132614423
Complex B
132614423
Complex C
U2 SnRNP specific factors
132614423
Chromosome and associated proteins [BR:
lbb03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
132614423
TFTC complex
132614423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
132614423
NCBI-ProteinID:
XP_060184860
LinkDB
All DBs
Position
10:115279270..115286629
Genome browser
AA seq
1211 aa
AA seq
DB search
MYLYSLTLQKPTGILCAINGSFSGGKLQEIVVARGKVLDLIRPDDNGRLQTLLSVEIFGS
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNCFDKVHQETFGKSGCRRIVPGQYL
GIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTITFSICGVDCGFDNPI
FAAIELDYAEADQDPTGQAANEAQKHLTFYELDLGLNHVSRKWSEQVDNGANLLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRVDLPAERGVLIVSAAMHKQKSMFFFLLQ
TEYGDIFKVTLDHDNDRVKELKIKYFDTIPVSSSLCVMKSGFLFASSEFGNHALYQFQAI
GDDPDVEASSSTLMETEEGFQPVFFQPRKLKNLVRIDQVESLMPIMDMKIVNLFDEETPQ
IFSLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQVLSLQSVSSPPESLLFLEVQASVGGEDGADHPASLFL
NAGLQNGVLFRTVVDMITGQLSDARSRFLGLRAPKLFSIVVRGRRAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEFAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPLRYTP
RRFVLQPKRKMVIMIESDQGAYTAEEREAAKKECFETAGNGENGNAEQMENGEDEDGNDP
LSDEQYGYPKSESGRWVSCIRVLDPRTTQTTCLLELQDNEAAFSICTVNFHDKEHGALLA
VGTAKGLQFWPKKSFEAAYIHIYKFKEDGKVLELLHKTQVDGVPLALCQFQGRLLAGIGS
VLRLYDLGKKRLLRKCENKLFPNSITAIHTYRDRIYVGDMQESFHYCKYRRDENQLYIFA
DDTVPRWLTAAQHVDFDTVAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGA
PNKVEEIVQFHVGDVVSCLQRASLIPGGGECIIYGTVMGSVGAMLPFTSRDDVDFFSHLE
MHLRQEFPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDMQRKIADELDRTPGEIL
KKLEEIRNKII
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacagtttaactctccaaaaacccacgggaatactctgcgccatcaacggc
agtttctccggcggaaaattacaagaaatcgtcgtggcacgtggcaaagtattagaccta
atccgacccgatgataacggtaggcttcaaaccttgttatccgttgaaatattcggatct
atacgttctttagctcaatttcggttaaccggtgcacaaaaagattatattgtagtcggg
tcggattcgggtcggatagttatattggaatataataaagaaaagaactgttttgataaa
gtacatcaggagacttttgggaaatcgggttgtagaaggatagttccgggtcagtatttg
ggtattgacccgaaaggtagagctgttatgattggtgcttgtgagaaacagaaattagtg
tatgtattgaatagagatactgctgctaggttaacgatttcgtcgccattagaagcacat
aagagccatacgattacgttttcgatatgtggggttgattgtggttttgataacccgata
ttcgctgcgattgagctggattacgcggaggcggatcaagatccgacgggtcaggctgcg
aacgaggcgcagaagcatttgacgttttatgagttggatttggggcttaatcatgtttcg
aggaagtggtctgaacaggttgataacggtgcgaatttgctcgtgacggttcccggtggt
ggggatggtccgagtggtgtgcttgtttgtgcggagaatttcgttatttataagaatcag
ggacatcctgatgttagggctgttattccgaggagggtagatttgccagcggaacgtggg
gttctgattgtttcggctgctatgcataagcagaagtcgatgtttttctttcttttgcaa
actgaatatggagatatctttaaggtgactttggatcacgataatgacagggttaaggag
ttaaagattaagtattttgatacgattccggtcagttcttctctgtgtgttatgaagtca
gggtttctgtttgcttcgtcagagtttgggaatcatgcattgtatcagtttcaggcgata
ggagatgacccggatgttgaagcttcatcgtcgacgttaatggaaactgaagaaggtttt
cagcctgtatttttccagccaagaaagctgaaaaaccttgttaggatcgatcaggttgag
agcttgatgccaatcatggatatgaaaatcgtaaatctttttgacgaggaaactccacaa
atattttcactttgtgggaggggtcctcggtcttcgttgcgtatacttaggccaggttta
gctgttagtgaaatggccgtgtcacagcttcctggtgttccaagtgctgtctggactgtt
aaaaagaatgttaatgacgagtttgatgcctatattgttgtctcttttgcaaatgcaact
cttgtgctttctattggtgagacagttgaagaagttagtgacagtgggtttcttgatact
actccttcccttgctgtttcattgatcggtgatgattcgttgatgcaagttcatcctagt
ggaataaggcatattagagaagatggtcgtattaatgaatggagaactcctggaaagaga
actattgtcaaggttggatcgaatagacttcaagtggtaattgcactaagtggaggggag
ctgatatattttgaagtggatatgactggccagttgatggaagtcgagaagcatgagatg
tcaggtgatgtagcttgtctggacattgcccctgttcctgagggaagacaaaggtcccgt
ttccttgcagttggatcatatgataacactattcgtatcttgtcgttggaccctgacgac
tgtatgcaggttctgagccttcaaagtgtatcttcaccgccagagtctctcctttttctt
gaagttcaggcctctgttggtggagaggatggtgcagatcaccctgccagccttttcctt
aatgctggtttacaaaatggggttttattcaggactgtggtggatatgataactgggcag
ctttcagatgcacgttcacgtttcttggggcttagagcccctaagctcttttccattgtt
gtgagaggacggcgtgctatgctctgtttgtcaagtagaccatggctaggttatatacac
caaggacattttcttttgacacctttatcatatgagactctagaatttgcagcctcgttt
tcatccgatcaatgtgcagaaggtgtggtagcggttgctggggatgcattgagggtcttc
acgatagagagattgggtgagactttcaatgaaacagctatacctttaaggtatacacca
agaaggtttgttcttcaacccaaacggaagatggtgataatgattgagagtgaccaggga
gcatatactgcagaagagcgtgaagctgccaaaaaagagtgcttcgagacagctgggaat
ggtgaaaatggaaatgcagaacaaatggagaatggcgaagatgaggatggtaatgatcca
ctatctgatgaacaatatggttatcctaaatcggaatcgggaagatgggtttcctgcatc
agagtccttgatccaagaacaacacaaaccacttgtctgctagagcttcaggataatgag
gctgcatttagcatatgcactgttaatttccatgacaaggagcatggagctctgttagct
gttggtactgccaagggccttcagttttggcccaaaaagtcgttcgaagcagcatacatt
catatatacaaatttaaagaagatgggaaggtcctagagcttttgcacaagacacaggta
gatggtgtgcctcttgcactatgtcagttccaaggaaggttactggctggtattgggtct
gtccttaggttgtatgatttggggaagaaaagactcctccgaaaatgtgagaacaagcta
ttccccaactcaatcacagctatccatacctatcgtgatcggatttatgttggtgacatg
caagagtcattccactactgtaagtatagacgtgacgaaaatcaactgtacatatttgct
gatgacacggttccgagatggctaacagcagcacagcatgtagattttgacactgtggct
ggagctgataagttcgggaatatctactttgtgcgattacctcaggacgtctcagatgag
atcgaagaagatcctactggtggaaaaataaaatgggagcaggggaagctgaatggtgcc
ccaaacaaggttgaggagatagtgcaatttcatgttggtgatgtggtctcttgcttgcaa
agggcatcacttattccaggagggggcgaatgcataatctacgggactgtgatgggaagc
gtcggggcaatgcttccatttacctcgagggatgacgttgacttcttctctcatttggag
atgcatttgaggcaggagttcccacctttatgtggcagggatcacatggcctatagatct
gcctacttccccgttaaggatgtgatagatggagacttgtgtgaacagttcccaaccttg
cctatggatatgcagcgcaaaattgcagatgagttggataggacaccaggcgagattctg
aaaaagcttgaagaaataagaaacaaaatcatttga
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