Lycium barbarum (goji berry): 132614462
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Entry
132614462 CDS
T09483
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132614462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132614462
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
132614462
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
GlfB_C
Motif
Other DBs
NCBI-GeneID:
132614462
NCBI-ProteinID:
XP_060184897
LinkDB
All DBs
Position
10:complement(18070879..18073990)
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AA seq
929 aa
AA seq
DB search
MEMDSSEGMSRNAEDTLHKVTSGPLPCTVAKLCGSLRGMPSDRDFHFYNNFSEFRTPISE
IDKKSKEILEKVGALSELWGKSISYPEDPDEEESGEWLVNINDDVLEKLALSLDEFRLLR
KKEEESGVKMEEEEDSESGGFQLVCRKKNRKVDKTEDKAEGVKVATKGKPKVPFHIPTIP
RPQDVYKIIVNNTNQPFEHVWLQRTDDGSRFVHPLEKLAPSNFVESAGIIEPVKPPPLEI
TSFKLVEEVKDLKQLATKLRAVDEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKL
RVHIGPHLRDIFKDHRKKKVMHGADRDIVWLQRDFGIYVCNLFDTGQASRVLKLERNSLE
YLLQHFCGVTANKEYQNADWRLRPLPAEMMRYAREDTHYLLYIYDVMRMELLSSSADNGS
PDAPLIEVYKRSCDICMQLYEKELLTDSSYQHIYGLQGAGFNAQQLAVVAGLHGWRDVIA
RAEDESTGYVLPNKTLIEIAKQMPLTTNKLKRSMKSRHPYVERNLGAVVSIIRYSVQNSA
AYEAAVEHLMERRLELPAEENIVATEGAEMLVEISEPPKPTTGTETSNVCSSSDASVFKH
ILGSIQQQNKCLKPESAVTKVGFSGPGDTSERRNEYGDLKATSLGQVEVTLQAIKKPCRG
LGMLLGSTAKRKLHPDKKEPEEIRVQQSKSSVSLPFHAFSGRIEQIQQAAIGPSKPLEIN
HRGEPVVTNSKLDVIALETDSDDGESVKGELSTREQENSFAMPVATSKLEDVILLDDDSY
LEELVTDDSEATNNQPECGETKNAVFAEEMDEGDENMALSNLSSSFNKRFHSINKKSKAK
LAEKLQAHEGQLKVQPFDYEAARKQGVFGEDPGKQQPEREGDESRRSMTGKKEDLVVGQP
PKIEGTSEFQQGRRRQAFPASGNRSYTFR
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggagatggattcatctgaaggtatgtccagaaacgcggaggatacgttacacaaagtc
acaagtggtccgttgccatgtacggttgcaaaactctgtggttctttaagaggaatgccc
agcgatagagacttccatttctacaacaatttcagcgaattcaggacgcccatttcagaa
atagacaagaaatccaaggaaatcttggagaaagtgggggcattgtcggaattatgggga
aagtccatatcgtatccggaggatccagatgaggaggagagcggagaatggctggtgaac
ataaatgacgacgttttggagaaactggcgttgtcattggatgagtttaggctgttgaga
aagaaagaagaggagagtggagtgaagatggaggaagaggaggattctgaaagcgggggg
tttcaattggtttgtcgaaagaagaataggaaagtagacaagactgaagataaggcggag
ggggtgaaagtggctaccaaagggaagccaaaggttccctttcatatacccaccatcccc
aggcctcaggacgtgtataaaataattgttaacaatacgaaccagccatttgagcatgtt
tggttgcagaggactgacgatggttccagatttgtgcatcctctggagaagttggctccc
tcaaactttgttgagagtgctggcatcattgagcctgtcaaacctcctccattagagatt
acttcattcaagcttgtggaagaggtcaaagatctgaagcagttagcaaccaagttacgt
gctgtggatgagtttgcggttgatttggagcataatcaatatagatcgtttcaaggattg
acatgcttgatgcaaatatccactagaactgaagattttgttgttgacactctgaagctt
cgtgttcacattggcccacatctgagagatatttttaaggaccacaggaagaaaaaggtg
atgcatggtgctgatcgagatattgtgtggcttcaacgtgactttggcatatatgtctgc
aatttgttcgacactggccaggcctcaagggttttgaaactggaaagaaacagtctggag
tacctgctacaacatttttgtggagttacagcaaacaaagaatatcagaatgcagattgg
agattacgcccacttcctgcagagatgatgagatatgctagagaagatacgcactatctc
ttgtacatttatgatgttatgaggatggaattgctctcttcatctgctgacaatggatct
cctgatgctcctctaatagaggtgtacaagcgcagttgtgatatatgcatgcagctgtat
gaaaaagaacttttgactgatagctcatatcagcacatatatggattacagggagctggc
ttcaatgcgcagcagcttgcagttgttgctgggctacacgggtggagggatgttattgcc
cgagcagaagatgaaagtactggctatgttttgccaaacaaaacacttattgaaattgct
aagcagatgcctcttaccacaaacaaattaaagcgatcaatgaaatcaaggcatccgtat
gttgagcgtaatcttggtgctgttgtcagcatcattaggtactctgttcaaaattccgct
gcatatgaagcagctgtggaacatctgatggaaaggcgcttagaattaccagctgaagaa
aacattgtggctactgagggtgctgaaatgttggttgaaatttctgagccaccgaaacca
acaacagggacagaaacttcaaatgtctgtagttcatctgatgctagtgtctttaaacac
attctaggttcaatacagcaacaaaacaaatgtctgaaaccagaaagtgctgtcaccaaa
gttggttttagtggacctggtgacacctctgaacgtcgtaatgaatatggtgatttaaaa
gctacttctttgggacaggtggaagtaactcttcaggcaattaagaagccctgccgtggt
cttgggatgttactagggagtacagcaaagaggaagctgcatcctgataaaaaagagccg
gaagagatccgagtgcagcagagcaagtcttcggtgagccttccattccatgcattttca
ggtaggattgagcagatacagcaagctgcaataggcccttctaaaccattggaaattaac
catagaggggaacctgttgttactaattccaagttagacgttatagccctggagactgat
tcagatgatggggaatcagtaaaaggtgagctatcaaccagagaacaggaaaactccttt
gccatgccggtagctacttcaaagttagaagatgttatcttactggacgatgattcatat
cttgaggaactagtcacagatgattcagaagctactaacaatcagcctgagtgtggggaa
accaaaaatgcagtttttgctgaggagatggatgaaggggatgagaatatggccttgtct
aatctctcctctagcttcaacaagcgtttccattcgataaataaaaaaagtaaggcgaag
cttgctgagaaactacaagcccatgaaggtcagttgaaggttcagccttttgactatgaa
gcagcaaggaagcaaggggtatttggagaagatccaggtaaacaacagccggaaagagaa
ggtgatgaatctcgtaggagtatgactggtaagaaggaggatttagtcgtaggtcagcca
ccaaagatagaagggacctcagagttccagcaaggtagaaggcgtcaagcttttccagct
tcggggaatcgaagctatactttccgttag
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