Lycium barbarum (goji berry): 132614818
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Entry
132614818 CDS
T09483
Name
(RefSeq) uncharacterized protein LOC132614818
KO
K19026
spatacsin
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
132614818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lbb03400
]
132614818
DNA repair and recombination proteins [BR:
lbb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
132614818
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spatacsin_C
DegS
Motif
Other DBs
NCBI-GeneID:
132614818
NCBI-ProteinID:
XP_060185348
LinkDB
All DBs
Position
10:20503344..20549751
Genome browser
AA seq
3205 aa
AA seq
DB search
MDFAYGGEDPAILQLQKWGSSQVQVNLSDFCEGFISPRRELLVLLSYHCEALLLPLGKNI
KDPQSFKNFQSQDASVSSSLERMVPGKTELGDGFESTSQSIETETCNQKTQSADFIGSNS
FPSISDVSTVAWGMCEDLCSQHDSVPFKELLFVLGGDGVTVHAFCQPYMMSELITPMEQD
DVGQGSWAEWGPSTASAQPSGAVYDSTMQSNDSLDVSDMSWSSATGGRANSCSMEGQKEV
SSESFGVKRWLRTYLTKVETMKSDGTVYTKFPDKSSVPSSASVVSFSNFLSCPQLLEFLS
DGCPISHAKQNGNISAEDHADSVSTDSTQMSPDALVDQMSSSYNCFRVFSNDAQCLIGFA
LNTKKNVQINSTNIDDGTGCKVLVALARLINWGMQWVCSVTVGKCLEGRPAIEWPEFRFS
HAFLICLNVSGLVSIYIALTGEYIACLDLLNVCGVSPSLVSQEQKNSSLKIRESCIEEKK
CCQLINQAGDFVGRRRFKRLLVISHSLTFCVIDEYGVTYVIHLDDHIPKKYCSLEKLHPR
YQQLSDGMLAAWEVGAAEIGYQRVLSDFFGEKEQSKSSIIRESSFADNKHGERKYGSYGR
SPSDALDVNKNRIFDNRLQSFYSRKVFLAIDGSKEDGVVCFSPFGITRLVKGKYSEGNGK
CRLIHSSLNVNMAINDDSSYNIQGWDAIVDEAIGCSFHGCLYLVTKDGIAVVLPRLSLPS
NFYPVEAIGYQQYSCYGAGSKYGVHKLHEFESTKRPFSPWKVEVLDKALLYEGPEVADQL
CLENGWDLSITWIRNLQLALEYLKFEEIEKSLEMLAHVNLAEEGVLRMLLVVVYLMSSKV
GNDNEVSAASRLLALGTSFATKMIREYGLLQHKKDGMESWKAGGVQNSFLSSELIDSRPD
GTEDLERLQKMAHFLEIIRNLQWRLTYKCKRLGQELVDQGEAVGETDLSQDESRILDLPA
DILSLEASNQKGLAPASEMERNNGEDLALMPVDGFDCKDISSLDTFKEPSLISEEKRVFS
IENPKDMIARWEIDNLDVKTVVKDAILAGRLPLAVLKLHLHRSRDLMLDQENQDTFNEVR
DVGRAIAYDLFLKGETGLAVATLQRLGEDIGTSLKQLVFGTVRRSLRMQIVEVMKGLAYL
GQHEWQILERISLIERIYPCSSFWSTFSSRHKEFKGESNGNAAEEIKLHLLAPLGRDLVI
ACGELDGVVLGSWMNVNEQPVAPEADDDSNHSSYWSAAAVWFDVWDQRVVDCIVLDQPFL
MGVNVLWESQLDYHIRHSDWLDVSRLLEVIPSYALTSGSLSVSLDGIHSSSVDEDLQKPQ
DCGSYIYSLEEVDAVCMNVPSVQIFRFSADSMCSMWLLMLMERELAKKFIFLKDYWGATA
DIVSLLSQSGFIRDVHKSLPTDEPAESWSESVLAISDARAHPDSIQAFHKVIVHHCSQHN
LLNFLDLYLDHHKLALDHESVSWMQGAAGDNQWAKWLLLQRVKGKEYEASFSNARAVVSH
NLVAGNSFSTMEIDDVIHTVDDIAEGAGEMAALATLMYAPIPIQDCLSSGSVNRLNSSVQ
CTLENLRPFLQRFPTLCRTLTAACFGQDPTCSSIGPKPKLFGYSDLLDYLNWREGVFFSS
AHDTSLSQMLPCWFPKAVRRLIQLYVQGPLGWQSIADLPVDDPSLLRDIVPSDISPLSWE
VDIQKNIEEELYDSSLKESRVGIEHHLHRGRALAAFNQLLSNRVQKLKSESSRRQHGIPV
QGQTNIQSDVQMLLSPITQSEQLFLSSVVPLAIVHFADSVLVASCALLLELCGLSPVTLQ
IDVAALRRIDSFNKSGHCSNHLQQLSPRGSSFHSNTCDNNITESLARGLADDYCQNDWFN
QANQKSDQLTISDRQPSRALMLVLQHLEASSLPSSANGVTCGSWLLTGNGDGVELRSQQK
AASEHWNLVTIFCQAHQLPVSTRYLALLARDNDWVGFLSEAQIGGYTLETVMEVALKDFG
DARLKTHILTVLKSIQSRKKFSSSSSSDTGEKKNGTSFPDENVCTPAELFGIIAECERQA
RPGEALLLQAKNLCWSLLAAIASCFPDVSSLSCLTVWLEITAARETSAIKVNNAASQIAN
NVAAAVEATNSLPASAKAPTVHYNRKNPKRRRLMEPESVHSLVFTMPDVRKADGNVRIQD
MTAGEECEKQVDQDDKASNDTDEVAGSLSRMVAVLCEQHLFLPLLRAFEMFLPSCSLLPF
IRALQAFSQMRLSEASAHLGSFSARIKEEPHVYTQAGKGGKIGSLWISSTAVKAADAMLS
RCPSPYERRCLLHLLAATDFGDGGSAATCYQRLYWKVNLAEPSLRKNDGLHLGNEPLDDA
SLLTTLEEHGHWEQARNWAKHLEASGGSWKSATHHVTETQAESMVTEWKEFLWDVPEERA
ALWGHCQTLFLRYSFPPLQAGLFFLKHAEAPEKDLPARELHELLLLSLQWLSGMFTQCSP
VCPLHLLREIETRAWLLAVESETQVKSEGEFTLSSREPASGKGPNIIDRTASIITKMDSH
INSVRIKSGERNDIRESNMSDSSSSGTILGSAKVKRRAKGFVPSRKSLADPVDRSNEPET
GSTNFNMKEDSQLPGENLKIEATFSKWEERVGPAELERAVLSLLEFGQIAASRQLQHKLS
PGCIPSEFTLVDAALKLAAIATPNNKVSILVLDGELRSVMQSYHLFPNQHVIDPLQVLES
FGLLLTEGRGRGLCRRIISVVKAANVLGLPFSEAFEKHPIELLQLLSLKAQDSFEEAKVL
VQSHYMPAASIAQILAESFLKGLLAAHRGGYMESQKEEGPAPLLWRFSDFLKWAELCPSE
PEVGHALLRLVATYQGIPHACEVELLILSHHFYKSSACLDGVDVLVDLAFKKVEAYVSEG
DFPCLARLVTGVGNYHALSFILGILIENGQLDLLLQKFSAAVDDNDGTAEEVRGFRMALL
TLLKQFNPNDHDAFAMVYRHFDMKHETALLLESRAQQSCKEWSLRSDKDQTDELLASMRY
FVEAAEVYSSIDAGNKTRQGCAQASLLYLQIRMPDLHFIYLSETNARRALVEQSRFQEAV
IVAEAYGLNQPGEWALVLWNQMLRPDLVEQFVAEFVAVFPLQPSMLLELARFYRAEVAAR
GDQSQFSVWLTGGGLPAEWAKYLGRSFRCLLRRTRDLRLRYQLATIATGFTDVVDACNKA
FDKIPESAGPLVLRKGHGGGYLPLM
NT seq
9618 nt
NT seq
+upstream
nt +downstream
nt
atggattttgcctatggtggtgaagatcctgcaatactgcagctgcagaaatgggggtcc
tcgcaagtccaagtcaacctgtcagacttttgtgaaggtttcatctctccaagacgggag
ttattggtgctactttcgtatcattgtgaagctttgctgcttccattgggtaaaaatatt
aaggatccacaaagctttaagaatttccagagtcaggatgcttcggtttccagctcactg
gagcgcatggtacctggtaaaacagagttaggggatggttttgagagcacttctcagtca
attgagacggagacgtgtaaccaaaaaacccagtcagctgattttataggatctaactct
ttcccttctatttctgatgtaagcactgtggcttggggtatgtgtgaagatttatgtagt
cagcatgacagtgttcctttcaaagaactgcttttcgtgttaggcggtgacggggtaact
gtccatgccttttgtcaaccttatatgatgagtgagttaataacacccatggaacaagat
gatgtaggtcaaggatcatgggcggagtgggggccgtcaacagcctcagctcaaccatcg
ggagctgtgtatgactccaccatgcagtccaatgactccctggatgtcagtgacatgagc
tggtctagtgcaactgggggaagagcgaatagctgttctatggagggtcaaaaggaggtg
tcatctgagagttttggagtgaaaagatggttgcgtacttatttgactaaagttgaaacc
atgaagtctgatggaacagtgtatacaaagttcccagataaatcgtcggttccttcatct
gcttcagttgtctcatttagtaattttctcagttgtccacagctattggagtttctatct
gatggttgtcctatatcacatgccaaacagaatggtaacatctcagctgaagatcatgca
gacagtgtatctacagattccacacagatgtcccctgatgctctagttgatcagatgagc
agttcttacaattgtttcagagtgttctctaatgatgcacaatgcttgattgggtttgcc
ttaaatacaaagaaaaatgttcaaattaacagcacaaatatagatgatggaacaggctgt
aaagttttagttgcattggctaggttgattaattggggaatgcagtgggtttgctcggtg
acagtgggcaaatgccttgagggcaggccagcaattgagtggccagagtttagattttct
catgcttttcttatttgtcttaatgtttctggcttagtctccatttacattgcattaacc
ggtgaatatatagcatgtttagatctgttaaatgtttgtggagtttctccttccttagta
tctcaagaacaaaaaaattcatctttgaagattagagaaagttgtattgaagagaagaaa
tgttgtcagctcatcaatcaagcaggagattttgttggtagaagaaggttcaaaaggctt
cttgtcatttcccattccttgacattttgtgtgatcgacgaatatggtgtaacatatgta
atacacttagacgatcatatcccaaagaagtattgttcacttgagaaattacaccctcgc
tatcaacaattgagtgatggaatgttggctgcttgggaggtaggtgctgctgaaattggc
tatcaaagggtcttatccgattttttcggtgagaaagaacaaagcaaatcatccattatt
agagaatcttcttttgccgataataaacacggggaaaggaagtatggctcatatggacgt
agcccatctgatgctcttgatgtaaataagaataggatttttgataatagattacagtca
ttctatagcagaaaagttttccttgctatagatggatctaaagaagatggcgttgtttgt
ttttctccttttggaatcactcggctagtgaagggaaaatattctgagggaaatggaaag
tgtcgacttattcattccagtttaaatgtaaacatggcaataaatgatgacagtagctat
aacatccaaggttgggatgccatagtggacgaagctataggttgtagttttcatggttgt
ttgtatttggtcacaaaggacggtattgctgtagttctgcctcgtctttctcttccttca
aatttctatccggtcgaagcaattggttaccagcagtattcttgttatggtgctggctca
aagtatggagtgcataagcttcatgagtttgaaagcacaaaaaggcctttttctccatgg
aaagtggaggtgttggataaagctctcttgtatgaagggcctgaagtggcagatcaatta
tgcttggaaaatggatgggacttgagtattacgtggattcggaacttgcagctggcactg
gaataccttaaattcgaggagattgaaaagtctttagaaatgcttgctcatgtcaatttg
gctgaagaaggcgtcttgaggatgctccttgttgttgtttatctgatgtcctccaaagtt
ggtaatgataatgaggtctctgctgcatcaaggcttcttgctttaggaactagctttgcc
accaagatgatacgagaatatggtttactgcagcataagaaagatggaatggagtcctgg
aaagctggaggtgtgcaaaattcttttctttcttcagagttgatagatagtagacctgac
gggacggaagatctggaaaggcttcagaagatggctcactttctggagatcataaggaat
ctgcagtggcgactcacatacaaatgcaaaaggctaggccaagaattggtggatcaaggt
gaagctgtaggtgagacagatttgtcacaggacgagtccaggattctcgatcttcctgct
gatatcttatctttggaggcttcaaaccaaaaaggactggctcctgcgtctgagatggag
agaaataatggcgaagaccttgctttgatgcctgtggatggatttgattgcaaggacata
tcttctttggacacttttaaagaaccatctttaatatctgaagaaaaaagagtcttttct
atagaaaatccaaaggatatgattgcacggtgggagatagataacctggatgtcaaaaca
gttgtcaaagacgctatacttgctggtcgtcttcctttggccgttcttaagctgcatctc
catcgttcaagagatttgatgttggatcaggaaaatcaagatacattcaatgaagttcgt
gatgttggaagagctattgcttatgacttattcctgaagggtgagactggacttgctgta
gcaacacttcaaaggctgggggaagatattggaaccagccttaaacagttagttttcggt
accgtccggagatctctacgtatgcaaattgttgaagtcatgaaagggcttgcgtatctt
ggacaacatgagtggcaaattttggagaggatctcacttattgagagaatttatccttgc
agcagtttctggagtaccttctctagccggcacaaagagttcaagggagaatcaaatgga
aatgcagcagaagaaataaaactgcacttattggctccattgggtagagacctagttatt
gcctgcggtgaacttgatggagttgtgctgggttcatggatgaatgtcaacgaacaacca
gttgctcccgaagctgacgatgatagtaatcattctagttactggagtgctgctgcagtg
tggtttgatgtctgggatcagagagttgttgattgtatagtgctggatcaacctttcctt
atgggggtcaatgttttgtgggagtcacaacttgattaccacattcgccatagtgactgg
ttggatgtatcaagacttttagaggtaatcccgtcatatgcgttaaccagtggaagcctc
agtgtcagtttggatggtatacactcttcatcagttgacgaagatcttcagaaacctcaa
gactgtggcagttacatatattctcttgaagaggtggatgctgtttgcatgaatgtgccg
agtgtccaaatattcaggttttctgcggacagcatgtgctccatgtggttgctaatgctt
atggagcgggaacttgctaagaaatttatttttctgaaggattactggggagctactgca
gatattgtgtctcttctttcccagtcaggttttatccgtgatgtgcataaatctttaccg
acggatgagccggctgagagctggtcagaatctgtactagctattagtgatgccagagct
catccagattccatccaagcatttcataaggttatcgttcaccactgttcacagcacaac
ttgctgaatttcctggatctttaccttgaccaccacaaattggctttagatcatgaatca
gtttcctggatgcagggtgcagcaggagataaccaatgggccaagtggttgctcttgcaa
agggtcaaggggaaagagtatgaagcgtcattctctaatgcccgtgctgttgtatcacat
aatttagttgccggtaacagtttcagcaccatggagatagacgatgtaatacatactgtt
gatgacatagcggaaggagcaggagaaatggcagctttggccacattgatgtatgctcca
attccaattcaagactgcttgagcagtggcagcgtgaacaggctcaatagttctgtgcag
tgtacattggagaatcttaggccattcctccaacgctttcctactttgtgtcgtacacta
actgcagcatgttttggacaagatccaacttgcagcagtataggtcctaaaccgaaattg
tttggttattctgatttattagactatttgaattggcgcgagggtgtgttcttctcttca
gcacatgatacttcactctcacagatgcttccttgctggttccctaaggctgtccggaga
ttaattcagctttatgtgcagggcccacttggttggcaatcaattgcagatttgccagtg
gatgatccctctctgctgagggacattgttccttctgacatcagtcccttgtcctgggaa
gttgacatccagaaaaacattgaggaggagctgtatgattcttcattaaaggaatctaga
gttggaattgagcaccatttacatcgtggacgtgcattggcagcttttaatcagctgctg
tcaaatagagttcaaaagttgaagtcagaaagttctcgtaggcagcatgggattccagtg
caaggacaaaccaacatccagtcagatgtgcagatgcttctttcacctattacacagagt
gaacagttgtttctttcatctgtcgtgccccttgctattgtgcatttcgctgattcagtg
ttggtggcgtcttgtgctcttctattggagttgtgtggtttatctcctgttacactccaa
attgatgttgcagctttgagaagaatagattcctttaataaatctggccattgttccaat
caccttcagcaactttcccccaggggttcttcatttcattcaaatacatgtgacaataat
attaccgaatctctagcacgaggattggcagatgattattgccagaatgattggttcaat
caagctaatcaaaaaagtgatcagttaacaatctctgacagacagccatctcgagctctc
atgcttgtcctgcaacatttggaagcatcaagtcttccgtcatcagctaatggagtgacg
tgcggctcttggttgttaactggtaacggagatggggttgaactgaggtctcagcaaaaa
gctgcaagcgagcactggaatttggtgacgatattttgtcaggcgcatcaacttcctgtg
agcactagatatcttgctttattagcaagagacaatgactgggttggttttctctcagaa
gctcaaattggaggctacaccttggagacagtgatggaagtagcattaaaggacttcggt
gatgcacgtctgaaaacccacatactaacagttctgaagagtatacaatcaaggaagaaa
tttagctcttcttcaagttcagatacaggagaaaagaagaatgggacatcatttccagat
gaaaatgtgtgtacaccggccgaactatttggaattatcgctgaatgtgagaggcaagca
aggcctggagaagctcttctcctgcaagcaaagaatttatgctggtcacttttggctgca
atcgcttcctgttttccagatgtctcttcgttgtcctgcctgacagtttggctagaaata
actgcagcaagggaaacatcagccatcaaagttaataatgctgcttcccagattgcaaac
aatgtcgcggctgctgtggaagccacaaattccctccctgcatctgccaaagcacctaca
gttcattataatcgcaaaaacccaaagcgtaggcggctcatggagcctgagtcagtgcat
tccttagttttcacaatgcctgatgtacgaaaggcagatggaaatgtgagaatccaagac
atgactgctggagaggaatgtgaaaagcaagttgatcaagacgataaagcttcaaatgac
actgatgaagtggctggttctttgtctagaatggttgctgtgctttgtgaacaacattta
ttccttcctctgctcagggcttttgaaatgtttcttccttcatgttcgctcttacctttc
atccgagctcttcaggcattttctcaaatgcgcctctctgaagcatcagctcatctagga
tccttttctgctagaattaaggaagaacctcacgtatacacacaagctggaaaaggagga
aaaattggaagtttatggataagttctactgctgtgaaagctgctgatgcgatgctttca
agatgtccttcaccttatgaaagaagatgcttattacacctcctcgctgccactgatttt
ggggatggaggttctgctgcaacatgttatcaacggctctactggaaagtaaatttggca
gaaccttctctccgcaaaaatgatggcctacatcttggaaacgagccactagatgatgct
tcgcttttaacaactttagaggaacatggacactgggaacaggcacgcaattgggctaag
catttagaggccagtggtgggtcttggaaatctgcaacgcaccatgttactgaaacacag
gctgagtccatggttacagagtggaaggagtttctttgggatgttccggaagaaagggct
gctttatggggtcactgccagactctctttcttagatattcttttccaccgttgcaggcg
ggattatttttcctcaagcatgcagaggcaccggaaaaggatctccccgccagagaactt
catgaactattgttgctttctctacagtggttgagtgggatgtttactcaatgcagtcca
gtttgtcccttgcatcttttgagagaaattgaaactagagcatggctactggctgttgaa
tcagagactcaagtgaaaagcgagggagagtttaccctttctagtcgtgaacctgcaagt
ggcaaggggcctaacataattgaccgaactgcaagcattattactaaaatggatagccac
attaattcagtgagaatcaagtctggagagaggaatgatataagggaaagtaacatgtca
gattctagctcttcaggtaccattttgggcagtgcaaaagttaaaaggagagccaaaggc
tttgtaccctcaagaaagtctttagctgatccagtggacagaagtaatgagcctgaaact
ggctccactaattttaatatgaaggaggattcacagctacccggtgaaaaccttaaaata
gaagcaactttctcaaagtgggaggaaagagttggacctgcagagctagaacgggctgtc
ctttcacttctggaatttggacaaattgcggcttcccgacagcttcaacataagttgtct
ccaggttgcataccgtctgaattcacacttgtggatgctgccctaaagcttgctgcaatt
gccaccccaaataacaaagtatcaatattggtgctcgatggtgaacttcgttctgttatg
cagtcataccatcttttccctaatcaacacgtgattgatcctctccaggtactggaaagt
tttggattactcctaactgaaggtaggggacgcggcctttgcaggcgaataatatcagtt
gtgaaggcagcaaatgtgttgggtcttccattttcagaagcatttgaaaagcatcctatt
gaactcttacaattgctttctctaaaagcgcaagactcttttgaagaagcaaaggtctta
gttcaatcgcattatatgcctgcagctagtattgctcaaattcttgctgaatcttttttg
aagggtttgctagcagcacaccgtggaggttacatggaatctcaaaaagaggagggacct
gctcctttattgtggagattttctgatttcttgaagtgggctgagctttgcccctctgaa
ccagaagttggccatgctttactgcgtttagttgccacttatcaaggaataccacatgcc
tgtgaagttgagcttctcattttgtcccaccatttctacaagtcctcggcatgcctcgat
ggagttgatgttcttgtagatcttgcattcaaaaaggtggaggcttatgtatctgagggt
gattttccatgtttagctcgcttggtaactggagtggggaactaccatgcacttagtttc
attcttggtatccttattgaaaatggtcagctcgatcttcttcttcagaagttttcagct
gctgtcgatgacaatgatggcactgccgaggaagtaagaggattcagaatggctcttctc
acattactcaagcaatttaatcccaatgatcatgatgcatttgccatggtttataggcat
tttgatatgaaacatgagactgctttgcttctggagtcacgagcacagcaatcatgtaag
gagtggtctctccgttctgacaaggatcagactgatgagctcctggcttccatgcggtac
ttcgttgaagctgctgaagtttactcttcaattgatgctggaaacaaaacacgccaaggt
tgtgcgcaggcatcacttctctatcttcagattcggatgccagacttacactttatctat
ctgtctgaaactaatgcacggagggcactggttgaacaatcccgtttccaagaagcagta
attgttgctgaagcttatggccttaaccagccaggtgaatgggctcttgtactttggaat
caaatgctcagaccagatctcgttgaacagtttgtggctgaatttgtggctgtgttccct
cttcaaccctcaatgcttcttgaacttgctagattttatagggctgaagtggctgcaaga
ggggatcaatcacaattttctgtgtggttgacagggggagggctcccggctgaatgggcg
aaatatcttgggagatcattcagatgtttgttgagaaggactagggacttgaggttgcga
taccaactggctaccatagcaacagggtttaccgatgtggttgatgcgtgcaataaagca
ttcgataaaatccctgaaagtgctgggcctcttgtcctgaggaaaggtcatggaggaggt
taccttccactgatgtaa
DBGET
integrated database retrieval system
