Lycium barbarum (goji berry): 132615367
Help
Entry
132615367 CDS
T09483
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52C-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
lbb
Lycium barbarum (goji berry)
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132615367
03041 Spliceosome [BR:
lbb03041
]
132615367
03036 Chromosome and associated proteins [BR:
lbb03036
]
132615367
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132615367
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
132615367
mRNA cycle factors
Common to processing body (P body) and stress granule
132615367
Spliceosome [BR:
lbb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
132615367
Chromosome and associated proteins [BR:
lbb03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
132615367
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
132615367
NCBI-ProteinID:
XP_060185947
LinkDB
All DBs
Position
10:31992206..31997336
Genome browser
AA seq
538 aa
AA seq
DB search
MSTRSTRPTYLPPHLRAQNTHNISDKFEKLVILENVNAYDDVPVDVSGTGNIPKPVSSFS
EMCFSKELNDNIKRCKYLNPTPIQRYAIPVAMGGRDIMACAQTGSGKTAAFCFPIISGIL
KEKTKRGCCQRQFGVALPLALILSPTRELASQIHEEAKKFSYLTGLKVVVVYGGAPIIPQ
LCNLEKGVDILVATPGRLVDMIEKSRVSLQAVKYLVLDEADRMLDMGFEPQVRKIVQKMK
MPPPGRRQTMLFSATFPTEIQRLASDFLSNYIFLAAGKVGSSTNLIVQRVEFVPDMDKKD
HLIDLLHAQYPNQTDAKQLPLTLIFVETKRGADALERWLVRSGFPSIAIHGDKMQFERER
ALKSFKSGHTPVLVATDVAARGLDVPNVAHVINFDLPRNIDDYVHRIGRTGRAGKSGLAT
AFFSDKNVPLAKDLVELMQGANQEIPDWLSEYAESSDGARTSSMFGGYDYRGTSFHSGSD
NNTSQFVDTEDATHYASAFTYGAPFAAGCYGTSQVDSFPAAPYSYSFDYGPVTASGWD
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgagtactcgttctactcgacccacttacctccctcctcacttgcgtgcccaaaacaca
cataacatttcagacaagtttgaaaaactggtgattcttgaaaatgtcaatgcatatgat
gacgttcctgtggatgttagtgggactggtaatattcccaaaccagtgtcatcattttct
gaaatgtgttttagcaaagagttgaatgacaacattaagagatgtaagtatttgaacccc
acacctattcagcgttatgcaataccagtggcaatgggtggtagagatataatggcatgt
gctcaaactggttcagggaaaactgctgcattttgttttcctattattagtggcattttg
aaggaaaagactaaaaggggttgttgtcaaagacagtttggggttgctttaccacttgct
ctcatactctctcctactagggagttggcttctcagatacatgaagaggcaaagaagttc
tcatacttgacaggattgaaggttgtggttgtatatggaggagcacccataattcctcag
ttatgcaatctggaaaagggtgttgacattttagttgccacccctgggcgcttggtggat
atgattgagaaatcaagagtttccttacaagcagtgaaatatttggtcttagatgaagct
gatcggatgcttgatatgggctttgagccccaagttcgtaagattgtccagaaaatgaag
atgcccccacctggtagaaggcagacaatgctttttagtgcaacatttccaactgagata
cagaggcttgcatcagattttctttcaaactacatcttcttggcagctggaaaagttgga
tccagcactaatctaatagttcaaagagttgagtttgtccctgatatggacaagaaggat
catttaatagatcttcttcatgctcaatatccaaatcaaacagatgcgaagcagctgcct
ttgactctaatatttgtggagaccaaaagaggggcagatgcattagaacgttggttggtc
aggagtggtttcccatccattgccattcatggtgataaaatgcaatttgagagagagcga
gcactaaaatcattcaaaagtggacatactccagttttagttgcaactgatgtagctgct
cggggtctggatgttccgaatgttgctcatgtcataaattttgacttgccaaggaacata
gatgactatgtgcacagaattggacgaacaggccgtgctggtaaatctggactggcaact
gcatttttcagtgacaagaatgtacctttggcaaaggatcttgttgaattgatgcagggg
gcaaatcaagaaattcctgactggctgagtgaatatgccgaaagcagtgatggtgctaga
acaagcagtatgtttgggggctatgactataggggtacttccttccatagtgggagtgac
aacaacactagccagtttgttgataccgaagatgctactcattatgctagtgctttcacc
tacggtgctcctttcgctgctggttgttatggtacttctcaagtggactcctttcctgct
gctccatacagttacagttttgattatggacctgttactgctagtggatgggattga
DBGET
integrated database retrieval system
