Lycium barbarum (goji berry): 132615715
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Entry
132615715 CDS
T09483
Name
(RefSeq) endoribonuclease Dicer homolog 2-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
lbb
Lycium barbarum (goji berry)
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lbb03036
]
132615715
Chromosome and associated proteins [BR:
lbb03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
132615715
microRNA pathway
RISC loading complex
132615715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
Helicase_C
DEAD
ResIII
PAZ
SNF2-rel_dom
Cas3-like_C_2
Dicer_dsRBD
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
132615715
NCBI-ProteinID:
XP_060186301
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All DBs
Position
10:complement(7496170..7507896)
Genome browser
AA seq
1403 aa
AA seq
DB search
MEPADVEVSENQQLSADPLPFARSYQLEALETSLKQNTIVYLETGSGKTLIAIMLLRSYA
YLLRKPSPYIAVFLVPKVVLVTQQGDSISMHTDLKVGTYWGEMGVDYWKAAMWQQEVEDH
EVLVMTPAILLAALRHSFLKIEMIKVIIFDECHNARGKHDYACIMKEFYHGQLTCVSAQL
PRIFGMTASPIKSKGSGTADSCWQKIRDLENLMHSKVYTCVSESVLAEYIPFSNTKLKIY
QNVNNSCTLFLSLAHDLKRLKEKHECSISKSNLSYMSAGSATRRLTKLYKAFLFCLSEMG
AWLAFKAAEFLSCAENEFFSWGELDVCAQTIVRDFSLGASKVFLSRLPSGSHWSIGGDIQ
ANTDAGYLTSKVTCLIESLLEYRDLKDLRCIIFVERIITAIVLRSLLNELLPELTGWRTE
YTGGHTSVVQSQSRKTQNKIVEKFRKGLVNIIVATSILEEGLDVQSCNLVVRFDPSTTVC
SFIQSRGRARMQNSDFLLMIGSGDSSTLTRMQSYMASGEIMRQESLRHASIPCSPLDDEL
LVERCYKVESTGAVVTLSSSVSLLYFYCSRLPSDGYFKPNPRCVIDNETETCTLHLPKSC
PLQRTISVQGNAKILKQLACLEACKELHHMGALTDNLVPDIVEEEAINKELEGQIHTVEE
SKYFPPELVSHCGNDSEAVYYCYLVELEHESCNDFPLHGIILAVRKRLMFDDEILAFELD
VDRGRRLQVQLNYSKVVTLTSEEIRRCQSFQVSVFRILLDRDLSKVQGALAAAVQSPIGS
AVSDYLLLPSLGSTPEINWKCVNSLLFPSHVLVDKHMDCCSTQGSKRSVNTKTGVVCSCM
LENSLVCTPHNGHIYCITGFLDNLDCNSLLDMRSGESFTYKEYYKKRHGIKICFEGEPLL
RGKHISKVHNYLQRCRAQKAKDSTDSSVELPPELCSLIMAPVSIFTLHTYSYVPSIMHRI
ESLVMASNLKRMHLDDCTLNVFIPTAKVLEAMTTKKCLEKFHLESLETLGDSFLKYAASI
QLFKTYENHHEGLLTVKKNRIISNAALCRLAIARKIPGFIRNEPFDLKTWLIPGDNSQVH
KFDEEFLMPSVKMYSRGKLKIKSKRVADVVEALIGAYLSSGGEVAALSFMKWLGLDIDFV
DAPMPRHFPMNAEKLVNVRYLESMLHYKFNDPSLLVEALTHGSYMLPEIPRCYQRLEFLG
DAVLDYVVTAHLYFKYPGLTPGLITDLRSASVNNECYAYSAVKAGLHKYILHASQELQRQ
IFGTVKDCEKLDLVSTFGWEAETAFPKVLGDVIESLAGAIFVDSSFNKDVTFQSIRPLLE
PLITPQTIKLHPVRELSELCDQKCYIKKKNVVSRENGVAYITVEVEANGVVYKSTCSGRD
KIITKKVASKNVLKSLKECASNA
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atggagccagctgatgttgaagtctcagaaaaccaacagctctccgctgaccctctgcct
tttgcaagaagttatcagttggaagccctggagacttcactaaagcagaacaccattgtt
tacttggagactggttccggaaagaccctaatagcgataatgcttcttagaagctacgcg
taccttcttcgaaagccatctccgtacatagctgttttcttggtcccgaaagttgttctg
gtgactcagcaaggagattctatcagtatgcatactgacttaaaagtcggaacatattgg
ggtgaaatgggtgttgattactggaaagctgcgatgtggcaacaagaagtggaagaccat
gaggtacttgttatgacaccagcgatactacttgctgctttgaggcatagctttctaaaa
atagaaatgataaaggttataatatttgatgagtgccacaatgcacgaggcaaacacgac
tatgcctgcataatgaaggaattttatcatgggcaattaacctgtgtgagcgcacaactt
ccaagaatattcgggatgactgcttcccctataaagtctaaaggttctggcacggcagat
agttgttggcaaaagattcgtgacctcgagaatcttatgcattccaaggtatacacgtgc
gtaagtgaatctgttttggcggagtatatcccattctcaaatacgaagctgaagatatat
caaaatgtgaataattcttgcacattgtttcttagtttagctcatgaccttaaaaggttg
aaagaaaagcatgaatgctcgatttcaaagtcaaatctatcttatatgagtgctggatct
gcaacaagaagattaacaaaactttataaggctttcctattttgtctgagtgagatgggt
gcttggctggctttcaaggcagccgagtttttgtcctgtgcagaaaatgaattcttttca
tggggagaactagatgtatgtgcccaaacaattgttagagatttcagtttgggtgcatct
aaggttttcttgtctcgcttaccatctgggtcacattggtcaattggtggtgatattcag
gcaaatacggatgctggatatttgacatccaaagttacttgtcttatagagtctcttctc
gagtacagggacctgaaggatttgagatgcatcatatttgttgagagaattattacagca
attgttcttcggtctctattgaatgagttgcttccggaactaactggttggagaactgag
tacacaggagggcatacttctgtggtgcagtcacagagtaggaaaacccaaaataaaatt
gtcgaaaaatttcgcaagggtctggtgaacattattgtagcgacatctattcttgaagag
ggcttggatgtccaaagctgcaaccttgttgttcggtttgatccctcaactactgtttgt
agctttatacaatctcgtggacgagctcgaatgcaaaactccgactttcttctgatgatc
ggaagtggggattcttcaaccctcactcgcatgcaaagctatatggctagtggggagata
atgcggcaagaatcattacgtcatgcttctattccatgttcacctctagacgatgaattg
cttgttgaacgttgctacaaagttgaaagcaccggagcagttgtcaccctcagttctagc
gtgtcattgttatacttctactgctctaggctaccttcagatgggtactttaagcccaat
cctaggtgtgtgattgataatgaaacagaaacctgcaccttacatcttcccaaaagttgc
ccactacaaagaactataagtgtacaggggaatgccaaaatattgaagcaacttgcatgc
ctggaagcttgtaaagaacttcatcacatgggggccttgactgacaatcttgttcctgat
attgtggaggaagaagccatcaacaaagaattggaaggtcaaatccatactgttgaagaa
tcaaaatactttccaccagaattggttagccattgcggcaatgattcggaagcggtgtac
tactgctacctagttgagttggaacacgagtcttgcaacgatttcccgcttcatgggata
atccttgctgttaggaaaaggctcatgtttgatgatgagatattggcttttgaattagac
gttgataggggacgacgcttgcaagtgcaattaaattatagtaaagttgttacgcttact
tctgaagagattcgacggtgtcagagttttcaagtcagtgtcttcagaattcttcttgac
cgtgatctgagtaaagtgcagggcgctttggctgctgcagttcagtcgcctattggttct
gcagtttctgattatcttttgcttccgtctttgggttcaacccctgaaataaattggaaa
tgtgtgaattctttgctgtttccttctcatgttcttgtggataagcatatggattgctgt
tctacacaaggtagcaagcgcagtgtgaacaccaaaactggggtggtatgtagctgcatg
ttggagaactcattggtctgtacacctcataacggccatatatattgcattaccggtttt
ttggataatttggattgcaactcattgttggatatgagaagtggagaatcctttacgtac
aaagaatactacaaaaaacggcatgggatcaagatatgctttgaaggagaaccacttctt
agggggaagcatatttctaaagtgcacaattaccttcagaggtgtagagctcagaaggct
aaagattcaactgattcatccgttgagttgcctcctgaactttgttcccttatcatggct
cctgtctctatttttacccttcatacctattcatatgttccttcgatcatgcatcggatt
gagtccttggttatggcctcaaatttgaaaagaatgcatttggatgactgcactctaaat
gtttttatcccaaccgctaaagttttggaagcaatgacaacaaagaaatgcctcgagaag
tttcatttggaatcactcgagacacttggagactcttttctcaaatatgctgccagtata
cagctgttcaagacttatgaaaatcatcacgagggtcttttaaccgttaagaaaaacaga
atcatttccaatgctgcactctgcaggcttgcaattgctcgtaaaataccgggatttatc
cgtaatgaaccattcgatcttaaaacatggctcattcctggcgataattctcaagttcac
aaattcgacgaagaattcctgatgccgtcagtaaaaatgtatagtaggggaaaactgaag
attaaaagcaagagagtagctgatgtggttgaggctctaataggtgcctacctcagctcg
ggcggggaagtagcggctttatcatttatgaaatggcttgggctggacattgattttgtt
gatgcacctatgcccaggcacttccccatgaatgccgagaagctagtaaatgtcagatac
ttggaatccatgctacattacaagttcaatgatccttctttgcttgttgaagcgctaact
cacggatcttacatgcttcctgagattccacgatgctatcagcgcttggaatttcttgga
gatgcagtgttagattatgttgttacagcacatctctatttcaaatatccgggactgact
ccaggactcattactgatttgagatctgcctctgtaaacaatgaatgctatgcttattct
gcagttaaggcaggcctgcacaagtatattcttcatgcctcacaagagttgcagaggcag
atatttggtactgttaaggattgcgagaaattggatcttgtgtccacatttggatgggag
gctgaaactgctttcccaaaggtgcttggagatgttattgagtcccttgctggtgcgatc
tttgttgattctagcttcaacaaagatgttacatttcagagcatacgacctcttctggaa
ccgttgattacacctcagacaataaagctccatcctgtaagagagttaagtgaactatgt
gaccagaaatgttatataaagaagaagaatgtcgtctctcgtgagaatggtgtggcatat
attacagttgaggttgaagcaaatggtgttgtttacaagagcacgtgctcggggcgagac
aaaataataaccaagaaggtggctagcaaaaatgtgctcaagtctctaaaggaatgtgca
tccaatgcatag
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