Lycium barbarum (goji berry): 132616463
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Entry
132616463 CDS
T09483
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132616463
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132616463
03012 Translation factors [BR:
lbb03012
]
132616463
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132616463
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
132616463
Translation factors [BR:
lbb03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
132616463
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
R3H
Helicase_C
DEAD
HA2_C
HA2_N
Ank_2
AAA_19
ATPase
AAA_22
nSTAND3
Ank_5
AAA_7
ABC_tran
AAA_16
Rad17
Sigma54_activat
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
132616463
NCBI-ProteinID:
XP_060186851
LinkDB
All DBs
Position
11:26655955..26668756
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AA seq
1202 aa
AA seq
DB search
MASTTSSSGFGKKRQKKGQRQQEVTNVAESTRIRVAQVLEQFRASNDQVYTFESNLSNRD
RAAVHMLCRKMGMKSKSSGRGDQRRISIFKTKNNVDTLKGKDALSGFKFLEEAKDVLQDL
FTRYPPDDGETSEQVVGKQSKKVDKLRGKKDDMFSKPAMNKSEIAKRVESLASRIENNPN
LRQITAQRSKLPIASFKDVITSTVESNQVVLISGETGCGKTTQVPQYILDHMWGKGETCK
IVCTQPRRISATSVSERISAERGESVGDTVGYKIRLESRGGRQSSIMFCTNGVLLRVLVT
SGSARFNKEAPRKMGTDDISDITHIIVDEIHERDRYSDFMLAILRDLLPSYPNLRLVLMS
ATLDAERFSKYFGGCPVIRVPGFTYPVNTFYLEDVLSIVKSTENNHLDSTSTSIMSEESL
LTEEYKVALDEAINLALSDDDLDPLLDLISSDGGQKVFNYQHSLNGVTPLMVFAGKGCVR
DICMLLSFGADCHLCANDGKNALDWAERENQTEAAELIKKHMEKLSSSCEEQQHLLDKYL
STVDPELIDDVLIEQLLRKICIDSEVDGAILVFLPGWEDINRTRERLKASHYFNDPSKFS
VIALHSMVPSVEQKKVFRRPPPGCRKIVLSTNIAETAITIDDVVYVIDSGRMKEKSYDPY
NNVSTLQSSWVSKASAKQREGRAGRCQPGICYHLYSKLRAASLPDFQVPEIKRIPIEELC
LQVKLLNPDCKIEEFLQKTLDPPVYETIRNAIIVLQNIGALSIDEKLTELGERLGSLPVH
PLTSKMLFIAILLNCLDPALTLACASDYRDPFTLPMLPNEKKKAAAAKAELASWYGGRSD
QLAVVAAFEGWKSAKENGQESRFCSMYFVSSSTMHMLSGMRRQLQSELLRHGFIPGDGSS
CSLNSQDPGILHAVLVAGLYPMVGRLLPPLKGGKRAVLETAGGDKVRLHPHSTNFKLSFK
KFFDRPLIVYDEITRGDGGLHIRNCSVIGPLPLLLLATEIVVAPGNEDDDDDNDDGESDY
EDADEDNGEEDNIKADPSDADQGEKIMSSPDNTVKVIVDRWIPFESTALDVAQIYCLRER
LAKAILFKVTHPGKVLPEVLAASIYAMACILSYNGMSGISLPLESVDSLTTMVSATEIGQ
SDPGWNSGMYMNPNNSPSSFGHNSRHQRPYMHHQRGGIHVSKGSFVYGGTGQRGHYKRQR
GN
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaacaacatcatcatctgggtttgggaagaagaggcaaaagaaagggcaaaga
caacaagaagttacaaatgttgctgaatccacccggattcgggtcgcacaagttcttgaa
cagtttcgtgcttctaatgatcaagtgtacacatttgaatcaaacctttcaaatcgtgat
agagctgcagttcatatgttatgccggaaaatggggatgaaatcaaaaagttctgggcgt
ggggatcagcgtcgtatatctattttcaagactaaaaataacgtggacacactgaaagga
aaggatgcgctaagtggttttaaatttttggaagaggctaaagatgttctacaggattta
tttacacgttatccacctgatgatggggagacaagtgaacaagtagttgggaaacagagt
aagaaagttgataaattacgaggaaagaaggatgatatgttctctaaacctgcaatgaac
aagtctgaaattgcaaaaagggtggagtcacttgcttcaagaatagaaaataacccaaac
ctgagacagattacagcacaaaggtctaagcttccaattgcttccttcaaggatgtcatt
acatcaactgtagaatctaatcaggtggtcttgatctctggtgaaactggatgcgggaaa
actacacaggtcccccaatatattttagatcatatgtggggtaaaggtgagacatgtaaa
attgtgtgtactcagccacggcgaatttctgccacatcagtttctgagagaatctctgct
gaaagaggtgaaagtgttggcgatactgttggttacaagatacggctggaaagcagaggc
gggaggcagtcatcaattatgttttgtaccaatggggttctactgagggtcctggttacc
agcggaagtgccaggttcaacaaggaagctcccaggaaaatgggcacggatgacatttct
gatataacccacatcattgtggacgaaattcatgagagggatcgctactccgatttcatg
ctcgcgattctcagggacttgcttccttcatatccaaatttgcgtttggttctgatgagt
gctacacttgatgctgaacgtttttcaaaatactttggtggctgcccagttatccgagtc
cctggatttacttatcctgtaaacactttctatcttgaggatgtactttctattgtaaag
tcaactgaaaataatcaccttgactccacctcaacaagtatcatgtctgaggaatcctta
ttaactgaggagtacaaagttgccttagatgaagcaattaatttggctctttcagatgat
gatcttgatccccttttagatctgatatcttctgatgggggacaaaaagtcttcaattat
cagcattctttgaatggagtgacaccgttgatggtgtttgctggaaaaggctgtgtccgt
gacatttgcatgctcctctcttttggtgctgactgccatttatgcgctaatgatgggaaa
aatgctctagattgggctgagcgggagaatcagacagaagctgctgaactaattaagaaa
cacatggagaaattatcttccagctgtgaggagcagcaacatttacttgacaaataccta
tcaacagttgatcctgaactgattgatgatgtccttattgagcaactattaagaaaaata
tgcattgactcggaggtggacggggccatacttgttttccttcctggttgggaggacatt
aacagaacacgagagagattgaaagcaagccactatttcaatgacccgtctaagttttca
gtaatcgctctccattctatggttccatctgtggagcaaaagaaggtttttagacgccct
cctccaggctgccgcaaaatcgttctttcaactaatattgctgaaactgccattaccatt
gatgatgttgtttatgtaatagacagtggacgaatgaaagaaaaaagttacgacccttat
aataatgtatcaactcttcaatcttcatgggtctcaaaagcaagtgcaaagcaaagagaa
gggcgtgctgggcggtgccagccaggaatttgttatcatctttattcaaaacttcgagca
gcttcattgcctgatttccaggttcctgagattaagaggattcctatagaggaactatgt
ctgcaggtcaagcttcttaaccctgattgcaagatagaagagttccttcagaagacactt
gaccctccagtttatgagaccatacgtaatgcaatcattgttcttcaaaatattggggcg
ttatcaattgatgagaaacttacagagcttggagaaaggctaggatctttaccagttcat
ccacttacaagcaagatgctttttattgccatattattgaactgccttgacccagcattg
actttggcttgcgcttctgactatagagatccatttaccctacccatgttgccaaatgag
aagaagaaagctgcagctgcaaaagccgagttagcctcatggtatggtggaagaagcgat
caattagcagttgtggctgcgtttgagggctggaaaagtgcgaaagaaaacggtcaggaa
tcgaggttttgttctatgtactttgtatcttcaagcactatgcacatgctatcaggaatg
cgtagacaattgcaatctgaactattgaggcatgggtttattccaggagatggatcttcg
tgtagccttaactcacaggatccaggcatattacacgctgttcttgttgctggtttgtac
cctatggttggtagactgctcccgcctttgaaaggtggtaagagggctgtcttagagact
gcaggtggtgataaagttcgattacatcctcattctactaactttaagctttcattcaaa
aaattctttgatcgaccattgattgtatatgatgagataactcgtggtgatggaggcttg
catataagaaattgtagtgttattgggcctctcccactgttgttgctggcaacagagatt
gtagtggctcctggaaatgaagacgatgatgatgacaatgatgatggtgaaagtgattac
gaagatgctgatgaggacaatggcgaggaggataatattaaagctgatccgtcagatgcc
gatcaaggagagaaaattatgtcttctcctgataatacagttaaggtcattgttgatagg
tggattccgttcgagtcaacagctcttgatgttgctcaaatttactgcctgcgagaaaga
ttagctaaagctattttatttaaggtcacacatcctggaaaagttcttcctgaggttctt
gcagcctctatatatgctatggcttgcatcttgtcgtacaacgggatgtcaggaatctca
ttgccgttggagtctgtggactcgcttactacaatggttagtgctactgagattggtcag
tctgatcctgggtggaacagcggaatgtatatgaatcccaacaattctcccagttcattt
gggcacaacagtcggcatcagcgcccctatatgcatcatcaaagaggcggcattcatgta
tcaaagggatcgttcgtgtatggaggaaccgggcaaagaggtcattataaacggcagcgt
ggaaattga
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