Lycium barbarum (goji berry): 132616671
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Entry
132616671 CDS
T09483
Name
(RefSeq) protein VACUOLELESS1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
132616671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lbb04131
]
132616671
Membrane trafficking [BR:
lbb04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
132616671
Hops complex
132616671
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Ortholog
Paralog
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
WD40_WDHD1_1st
Motif
Other DBs
NCBI-GeneID:
132616671
NCBI-ProteinID:
XP_060187223
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Position
11:complement(10110241..10122760)
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AA seq
843 aa
AA seq
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MAAVTVAAEWQLLYNRYYRKPELYQMQWKHVDLTRNKVACAPFSGPIAVIRDDAKIVQLY
AESALRKLRIFNCAGIQISETVWKNPGGRLIGMHWTDDQMLICITQDGTVYRYNVHAEAI
EPNSQLTLGVDCFTHSVVECVFWGNGVVCINEAFQVYCIPDFNNPKPIKLADTGLEDFPL
CMAVIEPQYTMSGNVEVLMGVADHVLLVEEDGVQEVGLGIGPLQKMVVSQNGKLLASFTH
DGRLLVMSTDFSSIIFEYPCESALPPEQLAWCGMDSVLLYWDDMLLMVGPYGDPVRYFYD
ESVLLIPECDGVRILSNMSMEFLHRVPDSTVSIFQIGSTLPAALLYDALDHFDRRSAKAD
ENLRLIRSSLPEAVEACIDAAGHEFDVSQQRTLLRAASYGQAFCSHFQRDCIQEMCKTLR
VLNAVRRPDIGIPLSIQQYKLLTPAVLIARLINAHRHLLALQISEYLSMNQEVVVMHWAS
TKITASAAIPDATLLEMLLDKLKICKGISYAAVAAHADKNGHRKLAAMLVEHEPRSSKQV
PLLLSIGEEDTALTKATESGDTDLVYLVLFHIWQKRPALEFFGTIQARPLARDLFVNYAR
HYKHEFLKDFFLSTGQLQDVAFLLWKESWELSKNPMASKGSPLHGPRIKLIEKAQHLFAE
TREYVFESKAAEEHAKLLRMQHELEVTTKQAIFVDSSISDTIRTCIVLGNHRAAVKVKTE
FKVSEKRWYWLKVFALATKRDWDALEKFSKEKKPPIGYRPFVEACVDADEKGEALKYIPK
LTDPRERAEAYARIGMAKEAADAATQAKDNELLGRLKQTFSQNSAASSIFDTLRDRLSFP
SVS
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagtaacagtagccgcagaatggcaacttctctacaatcgttactaccgtaaa
cccgaactttaccaaatgcaatggaagcacgttgacctcacgcgaaacaaagtcgcgtgc
gctccattctcgggtccaatcgccgttatccgtgacgatgctaaaatcgttcagctttac
gcggaatcagctctccgtaaactccgtatcttcaattgcgctggaattcagatttctgaa
acagtttggaagaatccaggtggtagattaattggtatgcattggactgatgatcaaatg
ctaatttgtataactcaagatggtactgtttatcggtataatgttcatgctgaagcgatt
gagcccaattctcagcttaccttgggagtggattgttttactcatagtgttgttgagtgt
gttttttggggaaatggtgttgtttgtatcaatgaggcgtttcaggtttattgtatacct
gatttcaacaatccgaaaccgatcaaactagcggatactggtctggaggattttccttta
tgtatggctgtgattgagccacagtatactatgtctggaaatgtggaagtattaatgggt
gttgctgatcacgtgttgttggtggaagaggatggtgttcaggaggttggacttggaatt
gggcctctacagaaaatggtggtttcccaaaatggaaagcttttggcatcttttacacat
gatgggaggcttcttgttatgtccacggatttctccagcatcattttcgagtatccttgt
gagtcagccctaccccctgagcagctagcttggtgtggaatggacagtgtactactctac
tgggatgatatgcttctaatggtgggtccttatggagatcctgtccgctatttttatgat
gaatcagtcctccttatccctgaatgcgatggggttagaatactctccaacatgagtatg
gaatttcttcatcgagttccagattcaacagtctccatatttcagattggtagcacatta
cctgcagctctgctttatgatgccttagatcattttgacaggcggagtgccaaggccgat
gagaatctgagactgatacggtcttcgctgcccgaggcggttgaagcatgtattgatgca
gcaggtcatgaatttgatgtttcacaacaacgtacgcttttaagagcagcaagctacggc
caagccttttgcagccattttcaacgggattgcattcaagagatgtgtaaaaccttacga
gtcctaaatgctgtacgtcgcccagatattggcattcctctcagtattcagcagtataag
ttgcttacacctgctgttctgattgctcgtcttattaatgctcatcgccaccttcttgca
cttcaaatatcagaatatcttagtatgaatcaggaagttgtagtcatgcactgggcatct
acaaagataacagcatcggcggcaatccctgatgctactcttctagagatgttacttgat
aagctgaaaatatgcaaggggatatcttatgctgcagttgctgctcatgcggataagaat
ggtcatcggaagttagctgccatgcttgttgaacatgaaccacgttcatctaagcaggtt
cctctcttgctaagcattggagaagaggatactgctctaacgaaggcaactgaaagtggt
gatactgatctggtttatcttgtcctcttccatatctggcagaagagaccagctttggag
ttctttgggacaatacaggccagacctctagctcgtgacttgtttgttaattatgcacgg
cattacaagcacgaatttttgaaggactttttcctatctactgggcaacttcaggatgta
gcttttctgttatggaaagagtcatgggaattgtctaaaaatccaatggctagcaaagga
tctccacttcatggtccaagaataaaactcattgagaaggcccagcacctttttgcagaa
acaagggaatatgtttttgaatcaaaagctgctgaagagcatgcaaaattgctaaggatg
caacatgagttggaggtgactacaaaacaggccatctttgtggattcaagtataagtgat
acaattcgtacatgcattgtgctggggaaccatcgtgctgccgtgaaagtcaaaacagaa
tttaaggtatccgaaaagcgatggtattggcttaaagtttttgctctggcaactaaaagg
gattgggatgccttggaaaagttttcaaaggagaaaaagccaccaattggttaccgccca
tttgtcgaggcatgtgttgatgcagatgagaaaggtgaagcactaaagtatataccaaag
ctgactgatcctcgggaaagagcagaggcttatgctcgaattggaatggctaaggaggct
gctgatgctgctacgcaggctaaagataacgaattacttgggaggttgaagcaaacattt
tctcaaaattcagctgcttcatccatttttgacacactgcgagaccggttatccttccca
agtgtttcttga
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