Lycium barbarum (goji berry): 132617054
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Entry
132617054 CDS
T09483
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132617054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132617054
Enzymes [BR:
lbb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
132617054
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
132617054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
132617054
NCBI-ProteinID:
XP_060187907
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All DBs
Position
11:1943001..1948755
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AA seq
711 aa
AA seq
DB search
MKKLCILKQLSHAPAAVLSTRHRKLTSSSSSSFDIKNVTKSNFESVVKELRGIIRDSDFV
AVDLEMTGVTSAPWRESFDFDRSDIRYLKVKDSAEKFAVVQFGVCPFRWDSNKHSFIAHP
HNFYIFPRQEIPGTNQSYEFLCQTTSLDFLAKYQFDFNLCVREGISYLSRSQEEEALERI
SSIYMDQSSDSVFRLREDAEFPLVRMADVLFAERMKNTIREWYDSLLSKRSSSSESKQIS
TDPNQRFQMVFFKTRPALSLSGFTSRQLRVIKAVTRKHFKDLAYIRVAGEATSLQQLIVY
TDSNDDRDLLMKEVKDGLHKEAELKVKSAVGFRHVIDLLSSERKLIVGHNCFLDMAHIYS
KFIGPLPSTAEDYVSSIQKYFPFIIDTKILLNANGVFQKMVNKSSTSLSKAFVSICPQIA
LGVKTSGLADRPCVEVEVQVDEKRSSNWNSGAKHEAGYDAFMTGCIFAQACNHLGIDFTL
HVLAGDLAKDTKLQNYINRLYLSWVSGDIIDLSTGTCTTDSSASSKLKSRYQEISFPSII
LLWGLPSKLKAREIKVCILQAFGPTSVSSVYHLDESAVFIQFSKPELVSKFLEMKETLSR
NSDPISVLHPLSNILNGEHTHAATYDVYRRICSSSISKKLFADQAEAVGIKNKTVSSRAE
RGKKGNLVFDKENEVRVFDEQVDDLMSPPYGSSETDRSAESFYLDEVLASK
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaactgtgtatattgaaacaattatctcacgcgccggccgccgttttaagcacg
cgccaccgcaagctcacttcatcttcatcttcatcattcgatattaagaatgttacgaaa
tcaaacttcgaatcagttgttaaggagttacggggtattatacgggactccgatttcgta
gcggttgatttggaaatgacgggagtaactagtgctccttggagagaatcgtttgatttt
gatcgaagtgatattcggtaccttaaagttaaggattcagctgagaagtttgctgtggtt
cagtttggtgtttgtccttttcgttgggactccaacaagcactcctttattgcccatcca
cataacttttatatattcccacggcaagaaattcctggtaccaaccaatcctatgagttc
ctttgccagacaacttcacttgatttcttggcaaaataccagtttgatttcaatttgtgc
gtacgtgaaggaatctcttatttatccagaagccaagaagaggaagcactggaacgtata
agttcaatatacatggatcaatcatcagattccgtgtttcgcttgagagaagatgcagag
ttcccattggttaggatggcagatgttctatttgctgagagaatgaagaacacaatcagg
gaatggtatgatagtttgttaagtaagagaagcagtagctctgaaagtaaacaaatatca
actgatccaaatcagagatttcaaatggttttcttcaagacccgtccagcgctttcccta
agtgggtttacttctcgccaactaagggtgattaaagcggtcaccagaaagcatttcaaa
gatcttgcctatatccgagtagctggtgaagcaacatctctgcagcaattgattgtctat
acagattccaacgatgacagggatctactgatgaaagaggtgaaggacggccttcataaa
gaagcggaactaaaggtcaaatctgctgttggatttcgacatgttattgatcttctttcc
tcggagcggaagttgattgtcggtcacaattgctttcttgatatggcacatatatacagt
aaattcattggcccactaccttcgaccgctgaggattatgtatcttccattcagaagtac
ttccctttcataattgacaccaaaatactcttgaacgcaaacggtgtttttcaaaagatg
gtgaataaaagcagcacatcactatccaaagcatttgtctctatctgtcctcaaattgct
ttaggtgtcaaaacttctggtttggctgatagaccatgtgtagaggtggaggttcaagta
gatgaaaaaagatcctcgaactggaactcaggagccaagcatgaagctggctatgatgca
ttcatgactggatgcatttttgcacaggcgtgcaatcatctaggcattgatttcaccctc
catgtgcttgctggagatttagccaaggatacgaagcttcagaattatatcaatcgtctt
tatcttagctgggttagtggagacatcattgatctaagtactgggacatgtacaacagac
tcgtcagcttctagtaaactcaaaagtcggtaccaggagatttcatttcctagcatcatt
ttgttgtggggtttgccatctaaactaaaagcaagggagatcaaagtttgtatattacaa
gcttttggcccaacttctgtttcctctgtctaccatttggatgaaagcgcagtttttatt
cagtttagcaagccagagctggtttctaagtttcttgaaatgaaggaaactctaagtagg
aacagtgatcctatttcagtgttgcatcctctttcaaatattctgaacggggaacacact
cacgcagctacctatgatgtatatagacgaatatgcagttcatccatctcaaagaaatta
ttcgcagatcaggctgaagctgttggtatcaaaaacaaaacagtgtcatccagggcagaa
cggggaaaaaagggaaaccttgtatttgacaaagaaaacgaagttagggtgttcgatgag
caagtagatgatctgatgagtccaccatatggctcctctgaaacagatagatcggcagag
tctttttatctagatgaagttctggctagcaaatag
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