Lycium barbarum (goji berry): 132617622
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Entry
132617622 CDS
T09483
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132617622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132617622
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132617622
mRNA degradation factors
5'-3' decay
Decapping complex
132617622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
WDR55
Beta-prop_EML_2
EIF3I
Beta-prop_Vps41
DUF6124
Motif
Other DBs
NCBI-GeneID:
132617622
NCBI-ProteinID:
XP_060188653
LinkDB
All DBs
Position
11:complement(1343860..1353818)
Genome browser
AA seq
1411 aa
AA seq
DB search
MASSPGNPNQPGGGGGVNTTSPFDMHKFFKPSNQTNPNNPQQNPNLISSSPFPPPNASYP
PPTTTPGGGLYPYPHPQFTHHLPQYPNPPPPQQYDNNNNTQFARSISFPTPPLQPPTPPP
PSTSPHPHQYPNPNPNPGARLMALLSAPPSTTLEVGPIQSTMQMAPIQPTTSGSDLEFSS
GPNVPGPGPMRMASSKLPKGRHLNGDHIVYDIDVRFPSEVQPQLEVTPITKYGSDPGLVL
GRQIAVNKTYICYGLKLGAIRVLNINTALRSLLKGLAQRVTDMAFFAEDVHLLASASVDG
RVYIWKITEGPDEEEKPQITGKIVIAIQIVGEGESVHPRVCWHCHKQEILVVGIGKRILK
IDTTKVGKGAAFSADEPVRCPVDKLVDGVQLVGSHDGEVTDLSMCQWMTTRLVSASVDGT
IKIWEDRKTNPIAVLRPHDGHPVNSAMFLASPHRPDHIILITGGPLNREIKIWASASEEG
WLLPSDAESWRCTQTLELKSSAEAHVEGAFFNQVVALSQAGLLLLANAKKNAIYAVHVEY
GPNPEATRMDYIAGFTVTMPILSFTGTSDLLPHGEQIVQVYCVQTQAIQQYALDLSQCLP
PPTESVVFERTESGVSRDAASTEGFAPVDPPGSKQQELPLSSSAPKSSVHEIGSEVSPTP
RYPTSTAPTESATSQEFASSIVETKSSTLPSVTSDSDIAPSASPPPPLSPKLSRKLSGFR
GPSNSCGADTSDNDQVGNQKVVEYPVDSTPSNLSDVASLDDEPKMSRDDVSSGISQPVKF
KHPTHLVTPSEILRARSSSEVSIVNEQKSESEMNIQDVVTNNDTRNVEMEVKAGGETKFS
KKTDIGSQDIHSFVSENKEKAFCSQVSDLGLEMARESRAFSPETCTVEESRGLDGASGSE
GPSQPSITPEEDHGSAKEVSEKDLDSTTSVTVQQQPAPSAKGKKQKGKNSQVSGPSSSSP
SVFNSTDSPSEAVVSSSSPSMETAFSQILSMREMLNQVLTTQKETQKQMEMMVAVPVTKE
GRRLEAALGRSMEKSVKANSDALWARLQEESAKQEKSLRDRTQQITNLISNCLNKDMPGL
MEKLMKKELAAVGQAVARSIAPTIDKTISAAISESFQKGVGDKAVNQLEKAVNSKLEATV
ARQIQAQFQTSGRQALQETLKSTLEASVIPAFEMSCKAMFEQVDLTFQKGIADHSAAAQQ
QFESMHSPLALALRDAINSASTMTQTLSGELADSQRKLLALAVSGANSQSANPLVSHMNN
GSLLHDKIETPPDPTKELSRLLGENKYEEAFTAALQRSDVSIVSWLCSQVDLPGMLSSNP
LPLSQGVLLSLLQQLACDISAETVQKLSWMRDVLSAINPTDPMIAMHVRPIFEQVYNILH
HRRSIANTPPAELSSIRLILHVINSMLMTGK
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttcacctggcaatccaaaccaaccaggtggtggtggtggtgttaatactaca
tcaccatttgatatgcacaaattcttcaaaccctcaaaccaaacaaaccctaataatcct
caacaaaaccctaatttaatttcatcttcacctttcccaccccctaatgcttcttaccca
ccacccaccactacccctggtggtggattatacccatacccacaccctcaattcactcac
cacttaccccaataccccaaccccccaccaccccaacaatatgataacaacaataatacc
caatttgcaagatccatttctttccccacccccccacttcaaccccccaccccaccccca
cctagtactagcccccacccccaccaataccctaaccctaaccctaaccctggtgctagg
ctaatggctttattaagtgctccaccatctactactcttgaagtgggtccgatacaatcc
actatgcaaatggctccaatccaacccacaacttccgggtcggatcttgaattttcatcg
ggcccgaatgttccaggcccgggcccgatgaggatggcgagtagtaagttgccgaaagga
aggcatttgaatggtgatcatattgtgtatgatattgatgttaggtttcctagtgaagtg
cagcctcaacttgaggttactcctattactaagtacgggtcggatccgggtcttgtgttg
ggcaggcaaatcgcggttaataagacgtatatttgttatggattgaaattgggggcgatt
cgggttcttaatattaatactgcattgagatcattgcttaaaggtcttgcgcagagggtc
acagacatggctttctttgcagaggatgttcatctcttggctagtgcgagtgttgatggc
cgggtttatatatggaaaattactgaaggaccagatgaagaagagaagccacaaattaca
ggaaagattgtcattgctattcaaatcgtgggtgagggggaatctgttcacccgcgtgtt
tgttggcattgtcataaacaggaaattcttgtggttggaatcgggaaacgcattttgaaa
attgataccacgaaagtgggaaaaggtgcggcattttcagccgatgagcctgtcaggtgt
cccgttgacaagttggttgatggggtacaacttgttggctcccacgatggagaagtgact
gatttatcaatgtgccagtggatgaccactcgtttggtatctgcttcagtggatggcacg
ataaagatatgggaagaccgcaagacaaatccaatcgcagttctcaggcctcatgatggt
catcctgttaattctgctatgttcttggcttccccacaccgcccagatcacatcatactc
atcactgggggtcctcttaatcgggagataaagatatgggcatcagcaagtgaagaaggc
tggttgcttcctagtgatgctgagtcatggcgctgtacacagacattggagctgaagagt
tcagctgaggctcatgtcgaaggggcattttttaaccaagttgtagccttgtctcaagca
ggtcttctcctactagctaatgcaaaaaagaatgctatatatgccgtgcatgtagagtat
ggcccaaacccggaggctacccggatggattacatagcaggatttacggttaccatgcca
attttgagtttcactgggacgagtgacctattgccccatggtgaacaaatcgttcaggtg
tattgtgtacaaacgcaggccattcagcagtatgccttggacttgtcccagtgcttgcca
cctccaacagagagtgtggttttcgaaaggacagaatccggtgtttcccgtgatgctgct
agcactgaaggattcgctcctgttgatccacctggaagtaaacagcaggagttaccttta
tctagttctgcacctaaatcatcagtacatgaaattggctctgaggtttcaccaacacct
agatatcctacgagtactgcacctactgaatcggccacctctcaagaattcgcttcctcc
attgtagaaactaaatcgtctactttgcccagtgtaactagtgatagtgatattgccccc
agtgcatcacctccgcctcctttgagtcctaaattgtctcgaaaactatctggttttaga
ggtccgtcaaacagctgtggggctgacacatctgataatgaccaagttgggaatcaaaaa
gttgttgaatatccagttgattcgacaccctcaaatttgtcagatgttgcttccttggat
gatgaacctaaaatgtcacgggatgatgtttcctcaggtatcagtcagcctgttaagttc
aagcacccaactcatttggtgactccctcggagatattgagggctagatcatcctctgag
gttagcattgttaatgagcagaaaagtgagtcagaaatgaatatccaggatgtcgtaact
aacaatgacacccgtaatgtagagatggaggttaaagctggtggtgaaacaaaattcagt
aaaaaaactgatattggctctcaagatattcattcttttgtgtcagaaaataaggagaaa
gctttttgctctcaagtatctgatcttggattagaaatggctcgagaaagtcgcgccttt
tctcctgagacctgtactgtagaggaatctagggggcttgatggggctagtggaagtgag
ggaccgtctcaaccttcaattacaccggaggaagatcatggctctgcaaaggaggtctct
gaaaaggatctagactcaacaacgtcagtcactgttcagcaacaaccagcacctagtgca
aaagggaaaaagcaaaagggaaagaattctcaagtttctgggccatcttcatcatcacca
agtgtttttaattcaacagattctccgagtgaggctgttgtcagctcaagtagcccttct
atggaaactgctttctcacaaattttgtccatgcgtgagatgctaaatcaggttctgact
acgcaaaaagaaacacaaaagcagatggaaatgatggttgctgttccagtgaccaaagaa
ggaagaagacttgaagctgccttgggtcggagcatggagaaatcggtcaaggccaattct
gatgctttatgggctcgtttacaagaagagagtgcaaaacaggagaagtctcttcgtgat
cgtacacaacaaataaccaatttgatctctaactgcttaaacaaggacatgccagggctg
atggaaaaattaatgaagaaagaactagcagctgttggacaagctgtggcacgcagtatt
gcccctactatcgataaaactatatcagctgcaatttcagagtcattccagaaaggagtt
ggtgacaaggcagtgaaccaactagagaaagcagtaaactccaaacttgaagctactgta
gctagacaaattcaagcacaattccaaacttctggcaggcaagctcttcaggaaacactg
aaatctactttggaagcttcagtaatccctgccttcgagatgtcatgcaaggcaatgttt
gagcaagtagatttaacatttcagaaaggcattgctgaccactcggctgctgcacaacag
caatttgagtccatgcattcgccgttggcacttgctctaagagatgccatcaattccgca
tcgacaatgacccagacattgagcggagagcttgctgatagtcagagaaagttgcttgct
cttgcagtatctggagcaaattcccaatcagcaaatccactggttagccacatgaataat
ggatcattgctgcatgacaagattgagacacctccagatccgacaaaagagttatccaga
ctgttaggggagaacaagtatgaggaagcattcactgcagcgttacaaaggagtgatgtg
tcaattgtttcatggttatgctctcaggttgatttgcctgggatgttgtcctcgaatcct
ctccctttgagtcaaggagtgctcctttcacttcttcagcagttggcatgtgatattagc
gcagagactgtccaaaaactatcctggatgagggatgtgctatctgccataaatccaact
gacccaatgattgctatgcatgtccggcccatcttcgagcaagtatataatatattacac
catcgcagaagcattgccaacacaccacctgctgaactttcaagcattcggctgattttg
catgttatcaattcgatgctgatgactggtaaatga
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