Lycium barbarum (goji berry): 132618486
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Entry
132618486 CDS
T09483
Name
(RefSeq) pre-mRNA-processing protein 40A
KO
K12821
pre-mRNA-processing factor 40
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132618486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lbb03041
]
132618486
Spliceosome [BR:
lbb03041
]
Complex A
U1 snRNP components
U1 related factors
132618486
Complex B
132618486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
132618486
NCBI-ProteinID:
XP_060189507
LinkDB
All DBs
Position
11:56118993..56155829
Genome browser
AA seq
1033 aa
AA seq
DB search
MASNPPPSGPQPLWPPSVGSTPPQGFGSSFPMQFRPALSTQQGQHFAPPISASPQYRPVG
QTPNAGMPPGQGQIPQFSQTMQQFPLRPGQPVHGTPSSQAIQMPYVQSSMPQPQQVIPPL
NSHMPSVNGAGNPFSSSYTVQSSSQMHVPTFPAGGQPWFSSGSQTTPVAAPNLLTSHQSS
AVARAVPASTSSQQTASDWQEFEAADGRRYYYNKITKQSSWEKPLELMTPLERADASTVW
KEFTTADGRKYYYNKETKQSKWTMPDELKLARELAENAAGQVVQTGTSTTSGVQVSEAVT
PTEQPPAVTPVSSTPSSTVSGVASSPVPVTPAVSDVNAPPLVVSGSSAIPTVSPAVTSSA
GVSSPVVSASTGSAALANAYHTQMSGIENLSPQVASSFSGACIQDIEEAKKGMAVAGKIN
VVPAEEKTADEEPFLYATKQEAKNAFKALLESSNVESDWTWEQTMRVIINDKRYGALKTL
GERKQAFNEYLMQRKKQEAEERRLRQRKAKEEFTKMLEESKELTSSTRWSKAVTMFEDDE
RFKAVEREADREDLFRNYLVDLQKKERAKAQEEYRRNRLEYKQFLETCGFIKVDTQWRKV
QDLLEDDERCSRLEKLDRLEIFQEYIRDLEKEDEEQRKLHKEQLRRAERKNRDAFRKMME
EHIAAGTLTAKTSWRDYCLMVKTSVAYQAVASNTSGSTPKDLFEDVAEELEKQYHEEKIR
VKDVVKSEKITISSTWTFEDFKVAVLEGIGSPSIHDVNLQLIFEDLIERAKEKEEKEAKK
RQRLAKDFTDKLSTIKEITDSSSWEECKELVEDSSEFRAIGEETISRAVFEEYVAWLQEK
AKEKERRREEEKAKKEKEKEEKEKRKDKERREKEREKEKEREKEKERGKERSKKDEPDCE
TMDVTDSYENKEERKREKDKERKHRKRHHSSNDEVTSDKDEKEEPEKDKERKHRKRHHSS
NDEVASDRDEKEESRKSRRHSSDRKKSKKHAHSPESDGESRHKRHRRDHRDGSRRNGGYE
ELEDGELGEDGES
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggccagtaatcctcccccatctggtccacagcctctttggcctccttcagttggatcc
actccacctcaaggttttggttcatcatttcccatgcaatttcgacctgctctatcaaca
cagcaagggcagcactttgctccaccaatttcagcctctccacagtatcgccctgttgga
caaacaccaaatgctggaatgcctcctggtcaaggtcaaataccccagttttctcaaaca
atgcagcagtttcccctaaggcccggccagcctgttcatggtacaccttcatctcaggca
attcagatgccatatgtccaatcaagtatgccacagcctcaacaagtcattccccctttg
aatagtcatatgcctagtgttaatggtgctggaaatccattctcatcatcatatacggtt
caatcttcatcccaaatgcatgttcctactttccctgcgggcggacaaccttggttttca
tctggaagtcaaacaacaccagtggctgcccctaatctgctgaccagtcaccaatcgtca
gctgtagctcgagcagttccggcgagcacatcgtcacagcagactgcgtctgactggcaa
gagtttgaagctgctgatggtagacgatattattacaataagattacaaagcaatctagc
tgggagaagcctttggagctgatgacacctttagagagagctgatgcgtcgactgtatgg
aaagaattcacaactgcagatggtcgaaagtattactacaacaaagaaacaaagcagtcg
aagtggacaatgcccgatgaactaaagttggctcgtgaactggctgaaaacgctgctggt
caagtagttcagactggaacaagcacaacttctggtgtgcaagtcagtgaagctgtgacc
ccaacagaacaaccacctgctgtcaccccggttagctccaccccttcttcaacggtttct
ggagttgcttcaagccctgttccagttacacctgctgtttctgatgttaatgctccacct
ctggtggtttctggatcatcagccattcctactgtgagccctgctgtgacaagttcagct
ggtgtctcttcccctgttgtttcagcgagtacaggatctgctgctctagctaatgcctat
catacacaaatgagtggcattgaaaatttatctcctcaagttgctagttcttttagcgga
gcttgtattcaggatattgaggaggcaaagaagggcatggcagttgctgggaagattaat
gtggtacctgcagaggagaaaacagcagatgaagaaccttttctatatgccactaagcag
gaggctaaaaatgcattcaaagctctattagagtcttctaatgttgaatctgattggaca
tgggagcagacaatgcgagttataattaatgataaacgatatggtgctctgaaaactctt
ggtgagcggaaacaggccttcaatgagtacctgatgcaaaggaagaaacaggaggctgag
gagaggcgccttagacaaagaaaggcaaaagaggaattcacaaagatgttagaggagtcc
aaggaactcacttcatctacaagatggagtaaggcagtaacaatgtttgaggacgatgaa
cggttcaaggctgttgaacgagaggctgatcgtgaagatctcttcaggaactacttggtg
gatcttcagaaaaaggagagggcaaaggctcaagaggagtatcgacggaatagattggag
tacaaacaatttttggagacttgtggctttatcaaggtagatacccagtggcgcaaagtc
caagatcttttggaagatgatgaaagatgttcgcgccttgaaaaacttgatcgattagag
atttttcaggaatacatccgtgacctggagaaggaggacgaagaacaaagaaaattacac
aaggagcaactgaggcgcgcagagcgcaagaaccgggatgcatttcgaaagatgatggag
gagcatatcgctgcaggcacgcttactgcgaaaacatcttggcgtgattattgtctgatg
gttaaaacatctgtggcttatcaggctgttgcatcaaatacttctggttcgacaccaaag
gatttgtttgaagatgtcgctgaagagttggaaaaacagtaccacgaagagaagattcgc
gtaaaagatgtagttaagtcagaaaagatcacaatctcatcaacatggacatttgaagac
tttaaagttgctgttttggaaggaattggttccccttccattcatgatgttaatctacag
cttatttttgaggatctaattgagagagcaaaggaaaaggaagagaaagaagctaaaaag
cgtcaaagacttgcaaaggatttcactgacaaacttagtaccatcaaggaaataactgat
tcctctagttgggaggagtgcaaagaacttgtggaggacagctcagaattcagagctatt
ggtgaagagacaatctcaagagcagtctttgaggaatatgttgcatggttgcaggaaaag
gcaaaggaaaaggaacgtaggcgagaggaggaaaaggccaaaaaagagaaagaaaaagag
gagaaagagaagagaaaggataaggagagaagggaaaaagagagagagaaggaaaaagag
cgtgagaaggagaaagaaaggggaaaggagcgatcaaagaaagatgagccagattgcgaa
actatggatgtaacagacagctatgaaaacaaagaagagagaaaaagagaaaaagacaaa
gagaggaaacatcggaagcgacaccatagctctaacgacgaggtgacttctgacaaggat
gagaaagaggagcctgaaaaagacaaagaaaggaaacaccggaagcgtcaccatagttct
aacgatgaggtggcatctgacagggacgagaaagaggaatctagaaagtcacgccgacat
agcagcgatcgtaaaaagtcaaagaagcatgcacattcacctgaatccgatggtgaaagt
cggcataaaagacacagaagagatcatagggatggatcacgtcgaaatggtggttatgaa
gagctagaagatggtgagcttggtgaagatggagaaagttga
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integrated database retrieval system