Lycium barbarum (goji berry): 132619313
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Entry
132619313 CDS
T09483
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 3
KO
K18999
RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:
3.1.3.16
]
Organism
lbb
Lycium barbarum (goji berry)
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lbb01009
]
132619313
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbb03021
]
132619313
Enzymes [BR:
lbb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
132619313
Protein phosphatases and associated proteins [BR:
lbb01009
]
HAD phosphatases
Fcp/Scp phosphatases
132619313
Transcription machinery [BR:
lbb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
132619313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_CPL3
NIF
BRCT
PTCB-BRCT
LdpA_C
Motif
Other DBs
NCBI-GeneID:
132619313
NCBI-ProteinID:
XP_060190234
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All DBs
Position
11:complement(83035816..83042706)
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AA seq
1222 aa
AA seq
DB search
MMEECNRVEDVEEGEISDSASVEEISEDAFNRQDPVTPTTKVVTSSNLPNNQNQNQNQNQ
NSTRVWTMRDVYKYPISRDYARGLYNLAWAQAVQNKPLDELFVMTTDDSNSNSKQSGDVE
MEPKVIIDVDDDAAKEEGELEEGEIDLDADLVVNNDDDFKTSNIREQLQSVTLAETDKSF
AVVCSKLQSSLDSLGELAISVPGKDGLIQLLMTALQTINSVFCSMNHNQKEENRDILSRL
LIHAKSQIPALLSSEQLKEMDAVILSINQSAVSANTEDQDNGIKVVQLLDMNVPHKSSEK
ANQDFTSVDKYDSGFVSTKSSDLKEQSVSFESLKPGLANSKARGLSIPLLDLHKEHDEDT
LPSPTREIGPQFPVAKASMQADGTMKPELPTFAGALEKGNPLLHPYETDALKAVSSYQQK
FGRSSLFVSEKLPSPTPSEEGDSGEGDIGGEISSSNVVHHASLLNSSSTGQPIMSSVSQT
NILAGTAQTADLLSFLPNPSLRSSTTKSRDPRLRLATSDAAAHNTNKNILPIPNIDLKLE
ASLEMIGSRKQKTVELPVFDAPLLKRQRSEQTDSIIVSDVRPLTGNGGWLEDRGSAGLPI
TSSNCVTDSCDNDIRKLEQVTTSVATIPSVIVNADENLPITGMSTSATLHSLLKDIAINP
STWMNIIKMEQKKSADASRTTAQASSSSSILGAVPSTDVVALTTSVIGQRSVGVLQTPTQ
TAAADDVAIVRMKPRDPRRVLHNTAVLKGGNVGSDQCRTSVAGTQEMASNLCVQRHEDQL
DSKSAVTLSTSPPDIARQFTKNLKNIADMISVSPSTSPSAASSRTPKQHLQVYQSRLEGK
GAISESSERLNDAVLASEKGSPGSLQPQSSWGDVEHLFDGYSDQQRADIQRERTRRLEEQ
KKMFAVRKLCLVLDLDHTLLNSAKFVEIDPVHEEILRKKEEQDREKPCRHLFRFPHMGMW
TKLRPGIWNFLEKASNLFELHLYTMGNKLYATEMAKLLDPKGDLFAGRVISRGDDGDPFD
GDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYIYFPCSRRQFGLPGPS
LLEIDHDERPEQGTLASCLGVIQRIHQNFFAHRSIDEADVRNILATEQQKILAGCRIVFS
RVFPVGEANPHLHPLWQTAEQFGAVCTSQIDEQVTHVVANSLGTDKVNWALSTGRFVVHP
GWVEASALLYRRANEHDFAIKP
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgatggaagaatgtaatcgagttgaagatgtagaggaaggtgagatctcagattcggct
tcagttgaagaaatcagtgaggatgccttcaataggcaagacccagtaacacctactact
aaggttgtcacttcctccaacttgcccaataatcaaaatcaaaatcaaaatcaaaatcag
aactcgactagggtttggacgatgagagatgtatataagtatccaatatcgagggattac
gctaggggtttgtataacttggcttgggcacaggctgtgcagaataagcctttagacgaa
ctatttgtcatgactactgacgactccaactccaattcaaagcaatctggtgatgtggag
atggagcctaaggtcatcattgatgtggatgacgatgctgctaaggaggaaggggaattg
gaggaaggcgagatcgacttggatgccgacctagttgtaaataatgatgatgactttaaa
acttcaaatattagggaacaacttcagagtgttactctagctgaaaccgacaaatccttt
gctgtggtttgttccaaattgcaaagctcattagacagcttgggggaactagctatttct
gtgccaggaaaagacggtctgattcaactgcttatgactgcactccaaaccataaattct
gttttctgctccatgaaccacaaccagaaggaagaaaacagagatattctatctaggttg
cttattcatgctaaaagccaaatacctgctcttctgtcttctgagcagttaaaagagatg
gatgccgtcattctctccataaaccagtcagctgtttccgcaaatactgaagaccaggac
aatgggatcaaagttgttcaactgttagatatgaatgttcctcataaatcttctgaaaaa
gcaaatcaggattttacttctgtagacaagtatgattcaggttttgtatctaccaaatct
tcagacctgaaggagcagagtgtgtcatttgaatctttaaaaccaggattagccaattct
aaagctagagggttatctattcctttgctggacctccataaggaacatgatgaagataca
cttccatcacctacacgagaaattggaccacaattccctgttgcaaaagcatctatgcag
gcagacggaacgatgaaaccggagttgcccacttttgcaggtgctcttgagaaagggaat
cctttattgcatccttatgaaacagatgcccttaaagctgtttcctcctatcaacagaaa
tttggtcgaagttccctttttgttagtgaaaagcttccaagtccaaccccatctgaagag
ggagatagtggcgaaggggacattggtggggagatctccagttctaatgttgtacatcat
gccagccttctgaattcatcgagcacggggcagccaataatgtcttctgtttcccagacc
aatattcttgctggaactgctcagactgcagatcttctgagttttctgccaaatccttct
ttgcgatcttctacaacaaaaagtagagatcccagactcagattggcaaccagcgatgca
gctgctcataacacaaataaaaatattttgcctatcccaaacattgatttgaaattagag
gcttctttagagatgataggttcaagaaagcagaagacagtagagctaccagtctttgat
gctccattgttgaaaagacaaagaagtgagcagactgattcaattattgtgagtgatgtg
cggcctttgactggaaatggtggttggttagaggatagagggagtgctgggttgccaatt
acgagtagtaactgtgttacagatagctgcgataatgacattaggaaattggagcaagta
acaactagtgtcgctactatacctagtgtcatagttaatgctgatgagaacttgccaata
accggcatgagcacttcagcaactttgcattctttattaaaagatatagctataaatcca
tcaacatggatgaatataatcaagatggaacagaagaaatctgctgatgcttctagaact
acagcgcaagcttcaagttctagctctattcttggagcagttccatcaacggatgtagtt
gctctcacaacttctgttattgggcagagatcagttggagtgcttcagactcccacacag
acagcagctgcggatgatgtggctatagtccgcatgaaacctcgtgaccctcggcgtgtt
cttcataatactgcagttctaaagggtggtaatgttggatcagatcaatgtagaaccagt
gtagcaggcacacaggaaatggcaagcaatctttgtgtccaaaggcatgaggaccagttg
gatagcaagtcagctgtgacactttcaacttcaccaccagacattgctcgccaattcacc
aaaaatttgaaaaatattgctgacatgatctctgtttcaccatccacgtcgccatctgct
gcttcttctcgaactccgaaacaacacttgcaagtttatcagagtagattggaagggaag
ggcgcaatttctgagtcaagtgaacggctgaatgatgctgtcttagcttctgaaaaaggt
tctcctggttcattgcaaccacagagctcttggggggatgttgagcatctatttgacggg
tacagcgaccagcagagagctgatatccagagagaaaggactaggaggcttgaggaacag
aaaaaaatgtttgctgttcggaagctctgtctcgtcttagacttggaccatactcttctc
aattcagcaaagtttgttgaaatcgacccagtccatgaagagatattgaggaagaaagag
gaacaagaccgtgaaaagccgtgtaggcacctctttcggtttccgcacatgggaatgtgg
accaagttacgccctgggatctggaatttcttggaaaaggctagcaatctttttgagctg
catctctatacaatggggaacaagctatatgccacagagatggcaaaattgctagatcca
aaaggggatctatttgctggacgagtgatctccaggggtgacgatggagatccatttgat
ggggatgaaagggttcctaagagtaaggacttggagggggttttgggcatggagtcggct
gttgtgattatagatgattctgtgagagtctggccacataacaagctaaatttgattgtt
gtggagaggtatatttacttcccttgtagtagacgacaatttggtcttcctggtccttct
cttcttgagattgatcatgatgaaagaccagaacaggggacattggcctcttgtttaggg
gttattcaaagaatacatcagaattttttcgcacatcggtctatagatgaagctgatgtt
aggaacatcttagccacagaacaacagaagattctggcaggttgccgtattgtcttcagc
agagtatttcctgttggtgaagccaatcctcatttgcatcctttgtggcagacagctgaa
cagtttggtgctgtctgcactagtcaaattgatgagcaggttacccacgtggttgccaat
tctcttgggacagataaggttaattgggcactttctaccgggcgatttgttgttcatcct
ggctgggtggaggcatcagctttactttatcggagggcgaatgaacatgattttgctatt
aaaccttaa
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