Lycium barbarum (goji berry): 132621482
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Entry
132621482 CDS
T09483
Name
(RefSeq) ATP-dependent RNA helicase-like protein DB10 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132621482
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lbb03041
]
132621482
03009 Ribosome biogenesis [BR:
lbb03009
]
132621482
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132621482
Spliceosome [BR:
lbb03041
]
Complex A
U1 snRNP components
U1 related factors
132621482
Complex B
132621482
Ribosome biogenesis [BR:
lbb03009
]
Eukaryotic type
Pre-60S particles
Helicases
132621482
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
132621482
NCBI-ProteinID:
XP_060191750
LinkDB
All DBs
Position
12:104351708..104361119
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AA seq
766 aa
AA seq
DB search
MAATATASSAGPRYAPEDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPVATSHGVTT
AQHKSSVSVSSSVQRPSQSQRPDRDDDNEYNRGPNGGLSKLSSGEGIQTARGSEPSPDVT
SAPKGYSAPAAASDISPDAYRRQHEISVTGGDVPPPFTSFEAAGLPPEILREIRQAGFPA
PSPIQAQSWPIALQGRDIVAVAKTGSGKTLGFLLPGFILLKRRRSTPQPGAGPTILVLSP
TRELATQIQDEAEKFGRSSKISCTCLYGGAPKGPQLRDLDRGVDIVVATPGRLNDILEMR
RIRLDQISYLVLDEADRMLDMGFEPQIRKIVKEVPTRRQTLMYTATWPKEVRKIAADLLV
NPVQVNIGNVDELVANKSITQYIEVLSYMEKQKRLDQILRSQEPGSKIIIFCSTKKMCDR
LAGNLTRPFGAAAIHGDKSQGERDHVLSQFRTGRSPVLVATDVAARGLDVKDIRVVVNFD
FPTGIEDYVHRIGRTGRAGATGEAYTFFCDQDAKHASDLIKVLEGANQKVPTELRDMASR
GGGMGRPKRQWDSGPGGREGGRGGRYDGGYGGRESGHGGRYDGGYGGRDGGRGGWEASSS
EKSGRGYDSDSRDSDRYDHGSHRTDAPASFHARSFHETMMQASQRRGRSPSRSPKRGSGW
GDSKSRERSRSRSAERSDRSPPRQGPVGRSFHESMMGHGGSSPVASKHRSPSAGDSREKV
GGSYDDSQKGWQRERSEGNGKFGDGPRADNGEGEEGVIREEDKRRA
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atggctgctactgcaactgcatcttctgctggtccacgttatgcaccagaggaccccacc
cttcccaaaccttggaaaggtctagttgatggtaagactggatatctctatttctggaat
ccagagaccaatgttacccaatacgagaggcctgttgctacttcccatggggttacaact
gcacaacataaatcgtctgtatctgtaagttcatcagttcagaggccttctcaaagtcaa
cgtcctgaccgtgatgatgacaatgaatacaacagaggtcccaatggtggcttgagcaag
ctttcctctggagagggtattcagactgcaagagggagtgagccttcccccgacgtaaca
tctgctcctaaaggttatagtgctccagctgctgcaagtgacatatctccagatgcctat
cgccgtcagcatgaaatttctgttacaggaggtgatgtgccgccacctttcacgtcattc
gaagcggctgggcttcctccggagattttgagggagattcgtcaagctgggtttcctgct
ccttccccaatacaggcacaatcctggcccattgcacttcagggccgcgacatagtagct
gttgcaaagactggctctgggaaaactttgggtttcttgcttcctggctttattcttcta
aagcgacgtcggagtactcctcaaccaggcgcaggccctactattttggttctgtcgcca
acaagagagttagccacacagatacaagacgaagctgagaagtttggtagatcttcaaag
atatcttgcacgtgtctatatggaggcgccccaaaaggccctcagctacgagatctggac
aggggagtagatattgttgttgctacccctggtcgtttgaatgatattttggagatgaga
agaattaggctggatcaaatttcttacttggtgttagacgaagcggatcgtatgctggac
atgggatttgaacctcagataaggaagattgtgaaggaggtgcctactcggcggcagaca
ctgatgtatacagcaacatggccaaaggaggttcgtaagattgcagctgatctattggtt
aatccagttcaggttaacattggaaatgttgatgagcttgtcgcgaacaagtctataact
cagtacattgaagtcttgtcatatatggagaaacaaaagcggctagaccagatcttgaga
tcccaggagcctggatcaaaaatcattatcttctgttcaacaaagaaaatgtgcgaccga
cttgctggcaatcttacacgcccatttggagctgctgcaattcatggtgacaaatctcag
ggtgagagggatcatgtattgagccagttccgcactggtaggtcccccgttcttgttgcc
actgatgttgctgctcggggcttggatgtcaaagatatcagggtggtggtcaactttgac
tttcctactggaatagaggattatgttcacagaattggaagaactggtcgggctggtgcg
actggtgaggcctacacatttttttgtgaccaggatgctaaacatgcttcagatctcatt
aaagttttagaaggtgcaaatcagaaagtgcctactgaactacgtgatatggcttctcga
ggtggtggtatgggaaggcctaagcgtcaatgggattctggcccaggtggacgtgaagga
ggacgtgggggacgttatgatggtggctatggtggacgtgaaagtggacatgggggacgt
tatgatggcggctatggtggacgagatggaggaaggggtggttgggaagcctcatcatcg
gaaaaaagtggacgtggttatgactcggattcacgtgacagtgatagatatgatcatggc
tctcatcgtaccgatgctccagctagcttccacgctcgtagcttccatgaaactatgatg
caggcttcacagagacgtggtcgaagtccgagcagaagcccaaaaagaggttcgggatgg
ggtgatagtaaaagtagggagcgcagtcgcagccgtagtgctgaaagatctgatcggtct
cctcctcgtcaaggcccagttggacgcagttttcacgaaagcatgatggggcacggtgga
tcatccccagtggcctcaaaacaccgatctccttcagccggtgattccagagaaaaagtt
ggagggtcatatgatgatagccaaaagggctggcaaagagaaagatcggaaggtaatgga
aaatttggcgatggacctcgtgctgacaatggagagggggaagaaggtgtgattcgtgaa
gaagacaaaagaagggcctaa
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