KEGG   Lycium barbarum (goji berry): 132621919
Entry
132621919         CDS       T09483                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1-like isoform X1
  KO
K14962  COMPASS component SWD2
Organism
lbb  Lycium barbarum (goji berry)
Pathway
lbb03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:lbb00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    132621919
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lbb03019]
    132621919
   03036 Chromosome and associated proteins [BR:lbb03036]
    132621919
Messenger RNA biogenesis [BR:lbb03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     132621919
Chromosome and associated proteins [BR:lbb03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     132621919
    COMPASS/SET1 complex (yeast)
     132621919
SSDB
Motif
Pfam: WD40_Prp19 WD40_WDHD1_1st WD40 WD40_CDC20-Fz EIF3I Beta-prop_EML_2 WDR55 Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_Vps41 Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_WDR75_1st Beta-prop_VPS8 Beta-prop_NUP159_NUP214 eIF2A Beta-prop_DCAF4 KNTC1_N Beta-prop_Nup120_160 VPS11_N Cytochrom_D1 Beta-prop_WDR35_TULP_N PEP5_VPS11_N BBS2_Mid
Other DBs
NCBI-GeneID: 132621919
NCBI-ProteinID: XP_060192378
LinkDB
Position
12:91281314..91290813
AA seq 332 aa
MAGGQSEREDKVSLETTEEILQSMEVGMTFRDYSGRISSMDFHKTSNYLVTASDDESIRL
YDVANATCLKTINSKKYGVDLVSFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH
RDRVVSLSLCSRKEYFISGSLDRTVLLWDQRAEKCQGLLRVQGRPATAYDEQGLVFAIAF
GGYIRMFDTRYYEKGPFEIFSVGGHVSDANTVKFSNDGRLVLLTTMDGHIHVLDSFRGTL
LSTYNVQPVPSSSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSTDTEPPMIK
WAPGSLMFVTGSSELSFWIPDLSKLASFVGRN
NT seq 999 nt   +upstreamnt  +downstreamnt
atggcaggtggacaatctgagagagaagacaaggtctcactagaaaccactgaagaaatc
ctacaaagcatggaagtcggcatgacatttcgcgactatagtggtagaatcagttcgatg
gatttccataagacatcaaattatctggtgacggccagtgatgatgagtccatacgtcta
tatgatgttgcaaatgcaacatgtttgaagactattaatagcaaaaagtacggggtcgat
ctggttagcttcacttctcatcctacgactgtgatatactcctccaagaatgggtgggat
gaatctctgcgacttctttcattgcatgacaacaagtacttgcggtatttcaagggtcat
cgtgacagagtcgtttctcttagcttatgctctagaaaagagtatttcatctctggctcg
cttgatcgaactgttctactttgggatcaaagagctgagaaatgccagggccttcttcga
gtgcaaggaagaccagctactgcttatgatgagcaaggccttgtatttgctattgccttt
ggaggatatataaggatgtttgacacacgctattatgagaagggaccttttgaaattttc
tctgttggtggacatgtatctgatgctaacaccgttaagttcagtaatgatgggagactt
gtgcttttgacaactatggatgggcatattcatgtgcttgattcgttccgtggcacactt
ttatcaacgtataatgtacagcctgttccaagtagttcaacgctggaggcatcttttagt
ccagaaggaatgtttgttatatcaggatcaggtgacggtagtgtctatgcttggagtgtc
cggagtggcaaagaagtagccagttggatgagtacagatactgaaccacctatgatcaag
tgggctccaggaagcttaatgtttgtgaccggctcttctgagctttcattttggatccca
gacttgtcaaaactggcatcttttgtgggaagaaactag

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