Lycium barbarum (goji berry): 132622299
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Entry
132622299 CDS
T09483
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb00040
Pentose and glucuronate interconversions
lbb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
132622299
Enzymes [BR:
lbb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
132622299
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
132622299
NCBI-ProteinID:
XP_060192867
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Position
12:complement(66680883..66682780)
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AA seq
396 aa
AA seq
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MEISITKMNGLLVLLFITFVTVGAAVPDNSTRRHLTKKYKGPCVAANLIDKCWRCDPRWA
DYREKYASCAMGFGRNAMGGKGGRVYVVTDNSDDDVQNPKPGTLRHAVIQKEPLWITFAK
HMHIKLSRELLMQSYKTIDARGFNVHIEKGAGIKMQGVSNIIITNLHIHNIGISSGGMIR
DSVDHIGIRGNDEGDAISIFASHDIWIDHVSMSRAADGLIDAVQGSTGITISNCHFTDHD
KVMLFGANDNYLDDKKMQITLAYNHFGKRLDQRMPRCRLGFFHLVNNDYTHWMRYAIGGS
SEATIISQGNRFIAQQDIAIKEVTHREKAVESEWKNWTWLSVDDDMQNGAFFRTSGDQNA
LSKLKNLNLMPAEPSYRVGILTKFSGSLGCTVGRAC
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggaaatctccataacaaaaatgaatgggcttcttgtcctcttgttcatcacatttgtc
actgtaggggcagcagtgccagacaacagcacgagaaggcacttgaccaaaaaatacaaa
ggaccatgtgtagcagctaatcttattgacaaatgctggagatgtgaccctcgttgggct
gattatcgcgaaaaatatgcttcatgtgccatgggctttggccgcaatgctatgggtgga
aaaggtggacgggtttacgttgtcactgataattctgacgatgacgtccagaatcccaaa
ccaggtaccctcaggcatgccgtgatccaaaaggagcccttgtggatcacattcgcaaaa
cacatgcatattaagctgagcagggaactactcatgcaaagctacaaaaccatcgatgcc
cgtggattcaatgtccatatcgaaaaaggagctggaattaagatgcaaggtgtgagcaac
attatcatcactaatcttcacattcacaacattggtatctcttcaggtggcatgatcagg
gactcagtagaccacattggcataaggggtaatgatgaaggcgatgccatcagtatcttc
gcatctcatgatatttggatcgaccacgtttccatgtcacgtgctgcggatgggctcatt
gatgccgtccaaggatcaaccggtatcaccatctccaactgtcacttcaccgatcacgat
aaagtaatgttgtttggtgctaacgataactacctcgatgacaagaaaatgcaaattact
ttagcttacaaccattttggtaagaggttggatcaaaggatgcctagatgcaggcttggg
ttcttccatcttgtcaacaacgattacacccactggatgaggtacgctattggtggcagc
agtgaagcaacaatcattagccagggaaatcgttttattgctcaacaggatattgcaatt
aaagaggtgacacacagggaaaaggcagttgaatcagaatggaaaaactggacttggtta
tcagtagatgatgatatgcaaaatggtgcattctttagaacttctggtgatcaaaatgca
ctaagcaaattgaagaacctcaatttgatgccagcagagccatcgtatagagttggaatt
cttactaagttctcaggatcacttggttgcacagtaggacgtgcgtgttag
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