KEGG T09483: 132622336

Lycium barbarum (goji berry): 132622336

Entry

132622336         CDS       T09483

Name

(RefSeq) methyl-CpG-binding domain protein 4-like protein

K10801

methyl-CpG-binding domain protein 4 [EC:3.2.2.-]

Organism

lbb Lycium barbarum (goji berry)

Pathway

lbb03410

Base excision repair

Brite

KEGG Orthology (KO) [BR:lbb00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    132622336
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:lbb03036]
    132622336
   03400 DNA repair and recombination proteins [BR:lbb03400]
    132622336
Chromosome and associated proteins [BR:lbb03036]
Eukaryotic type
  Heterochromatin formation proteins
   MBPs (metylated DNA binding proteins)
    132622336
DNA repair and recombination proteins [BR:lbb03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     132622336

SSDB

Motif

Pfam:

Myb_DNA-bind_3 HhH-GPD DUF4250

Other DBs

NCBI-GeneID:

132622336

NCBI-ProteinID:

XP_060192914

LinkDB

Position

12:1808913..1812663

AA seq 692 aa
MEPRWTLKESVGGGSVHVKKIRTSMSSSRRRAKPWREFLIGILYEELVIHEKDFNQLDWQ
GVVQKLYHQTGKQIGVTQLQALCKKFRDETKQFMDLLQVTGYEWNPNNNKVTCNDDVWEH
IYWIHGGKKMFRNKGLLHYKMLREIFGTAKYGNHSVNCRFLSESDDGKNQTNRARSSRSM
SAQSCDNVSIVAKVGDDMQDVCMDNKRKKKRKKQREKHCEEEVKIVKSSPYFEKVPDYEE
TRSSQAISDLYMKPIKSEWMVTPEMHQRSNKRKRKKNAKRGDDEKLGNDKREMDANPVLT
GPPDTKLENINENDNKQSADLDEGSATVASISVNRGHNAVVKSIDDLLSQFVYKGGSFSS
GKRRTQDEKIVLKSQVSSPFSRRFKTMQKSSESGSMIGNESHLSHSGEGGCRTMFEPCVS
QNQIDGKMIEQKARVVSPYFVNAKNGETEVKKGRLVKRVMKGNGKSDKKSRTKVRVVSPY
FAKSTVGEDTKVGVDRPKPSKNCLTKRKVSPYFQTAHREKKKSGKSSKGQKSLLSASQKR
DEAYLRRSEDNTWVPPRSHFNLLQENHAHDPWRVLVICMLLNCTTGVQVERVLAEFFTLC
PNAVVATEVAAEDIENLIRPLGLYRKRSLDIQRLSQEYLGKTWTHVTQLHGIGKYAADAY
AIFCTGKWDRVHPNDHMLTKYWEFLHEIHGNG

NT seq 2079 nt +upstreamnt +downstreamnt
atggaacccagatggactctgaaggaatccgtaggcggtgggtcggtccatgtgaagaag
atacgtacaagtatgtccagttcacgccgcagggcgaagccatggagggagttcctcatc
ggaatcctctatgaagaattggtgattcacgagaaagacttcaaccaactagactggcaa
ggagttgttcaaaaattatatcatcaaacaggcaaacaaattggtgtaacacaactgcag
gcattatgtaaaaaatttagagatgagacaaagcagttcatggatctgttacaagttact
ggttatgaatggaacccaaataacaacaaagtaacttgtaacgatgacgtctgggaacat
atttattggatccatggtggtaagaagatgtttagaaataaagggcttttacattataaa
atgttaagggagatatttggcactgctaaatatggcaatcacagtgtcaattgtaggttt
ctttcagaatcagatgatggtaagaaccagacaaacagggcgcgttcatcaaggtcaatg
tcagctcagagttgtgataatgtttctattgtagcaaaagtcggtgatgatatgcaggat
gtatgtatggataataaaagaaagaagaaaaggaagaagcagagggagaaacattgtgaa
gaggaagtaaaaattgtaaaatcttctccatatttcgagaaagtgcctgactatgaggag
actcgaagtagtcaagctatttctgatttgtatatgaagcctatcaagagtgagtggatg
gttactccggaaatgcatcagaggagtaacaaaaggaagagaaagaaaaatgctaaacgt
ggtgatgatgagaaattgggaaatgataagagggaaatggatgccaatccagtcctgact
ggtcctcctgatacaaaattggaaaatattaatgagaatgataataaacaatctgctgat
ttagatgagggaagtgctactgttgcttcaatttcggttaatcgtggtcataatgcagtg
gtcaagagtattgatgatctcttatcacagtttgtatacaaaggtggaagctttagttcc
ggtaaaaggaggactcaagatgagaagattgtcctcaagtcacaagttagtagccctttc
tctcgaaggttcaaaacaatgcaaaagtcttcggaatctggctctatgattggaaatgag
agtcatttatcacattctggggaaggaggctgcagaactatgtttgaaccttgcgtatct
cagaatcagattgatggcaagatgattgaacagaaagcacgagtagtttccccttacttc
gtgaacgcaaagaatggtgaaactgaagtgaagaaaggaaggttggtaaaacgtgtgatg
aaaggaaacggaaaaagtgacaagaaatcacgaaccaaagttcgagtggtgtccccgtac
tttgctaagtcaacagtgggagaagacacaaaggtaggggtggatagaccaaagccttct
aagaactgtctcaccaaaaggaaggtttctccctactttcagactgcacaccgtgaaaag
aagaagagtggaaaaagttcaaaagggcagaaatctctcctctctgcttcccagaaaaga
gatgaggcttatttaaggaggagtgaagacaacacttgggtacctccgcgatcccatttt
aatcttctccaagaaaaccatgctcatgatccttggagggtgttagttatttgcatgctt
ctaaattgcaccactggtgtgcaggttgagagagtgctagcagagttttttactctgtgt
ccaaatgcagtggttgctacagaggttgctgcagaggatattgaaaatctgatacgacct
ttaggattatataggaagaggtcactggatattcaacggctctctcaagaatatctcgga
aaaacttggactcatgtcacacagctgcatggcattggcaagtatgcagctgatgcctat
gcaatattttgtacgggcaagtgggatcgagtacatccaaatgatcatatgctaactaaa
tactgggaattcctgcatgaaatccatggaaatggctag

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