Lycium barbarum (goji berry): 132622401
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Entry
132622401 CDS
T09483
Name
(RefSeq) probable pectate lyase P59
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb00040
Pentose and glucuronate interconversions
lbb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
132622401
Enzymes [BR:
lbb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
132622401
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
132622401
NCBI-ProteinID:
XP_060192991
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Position
12:complement(102936750..102940249)
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AA seq
446 aa
AA seq
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MTGSKLIYLCLLLFSTFLAINGHIGDFDEVWRRRAQEADEWALQAYKPDPMNVTLAFAKQ
TRETLEDIKEAKKLATNETRRQLKGDKKYNGPCLVTNPIDRCWRCQPNWADNRQRLADCA
MGFAKGTTGGKAGDIYIVTDNSDDSSDPKPGTLRYGVIQKEPLWIIFAKSMNIRLTQELI
VQSDKTIDGRGVNVHIANGAGIMLQYVKNVIIHGLHIHDIHEGNGGLIRDAVDHIGQRTK
SDGDGISIFGSSNIWVDHVSMWRCYDGLVDAVEGSTAVTISNSHFTDHNEVMLFGASDSS
SIDQRMQITVAFNHFGKRLIQRMPRCRWGFIHVVNNDYTHWNMYAIGGSQHPTIISQGNR
FIAPPDQFKKEVTKRDYSPESVWQQWTWRSQGDLFMNGAFFVESGDPDWTKKHIDLFDGI
ASASGDDVTWITRFSGALNCKPGQAC
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgacaggatctaagctgatatatttgtgtctgttactattttccacatttttggcaata
aatggccacattggtgactttgatgaggtgtggcggaggagagcccaggaagctgatgaa
tgggctcttcaggcctataagcccgacccgatgaatgtcacccttgcatttgccaaacaa
actagggagaccttggaggacataaaggaagcgaagaagctggcaacaaatgaaacaagg
agacaattaaaaggagacaaaaaatacaacgggccttgtttagtcacaaacccaattgat
aggtgttggagatgccaaccaaactgggctgacaatcgtcaaagattagcagattgtgca
atgggctttgcaaaagggaccactggtggaaaagctggtgatatctacattgttacggac
aattcggatgacagtagcgatccaaaaccaggaactctccgttacggtgtaattcaaaaa
gagccattgtggattatttttgctaaaagcatgaacattaggctgactcaagaactcata
gtgcaaagtgataagaccattgatggccgtggagttaacgttcacattgcaaatggcgca
ggtatcatgttacagtacgtcaagaacgtaatcatccacggtctccacatacacgacatt
cacgaaggcaatggtgggttgatcagagacgctgtggaccacattggccaacggacaaag
agcgacggagatggtatttctatatttggttcgtcaaatatatgggtcgatcatgtgtca
atgtggcgttgttatgatgggcttgttgatgctgtggagggatccactgctgttacaata
tctaacagtcacttcactgatcataacgaagttatgctttttggtgcgagtgacagttct
tcaattgatcaaaggatgcaaatcactgtggcttttaatcattttgggaagagattgata
cagagaatgcctaggtgcagatggggttttattcatgttgttaacaatgactatactcat
tggaatatgtatgctattggtggtagccaacatcccactattattagccagggtaatcgt
ttcattgctccacctgaccagttcaagaaagaggtaacaaagagggactattccccagaa
tcagtatggcaacagtggacttggagatcacaaggtgatctattcatgaatggagccttc
tttgttgaatctggagatccagattggaccaagaaacacatcgacctttttgatgggatt
gcatcagcctcaggggatgacgtcacttggattacaaggttttcaggcgcactaaattgc
aagccaggacaagcttgttag
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