Lycium barbarum (goji berry): 132622438
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Entry
132622438 CDS
T09483
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like
KO
K08775
breast cancer 2 susceptibility protein
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03440
Homologous recombination
lbb03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
132622438
03460 Fanconi anemia pathway
132622438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lbb04121
]
132622438
03036 Chromosome and associated proteins [BR:
lbb03036
]
132622438
03400 DNA repair and recombination proteins [BR:
lbb03400
]
132622438
Ubiquitin system [BR:
lbb04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
132622438
Chromosome and associated proteins [BR:
lbb03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
132622438
DNA repair and recombination proteins [BR:
lbb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
132622438
FA (Fanconi anemia) pathway
Downstream FA components
132622438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_OB1
BRCA2
BRCA-2_helical
Tower
Motif
Other DBs
NCBI-GeneID:
132622438
NCBI-ProteinID:
XP_060193023
LinkDB
All DBs
Position
12:complement(1160081..1169423)
Genome browser
AA seq
1073 aa
AA seq
DB search
MRTWQLYSVSGNVLGWKVETVMEEATLALPPTLPQQHLQSMPDLLRQGSSRLADKQHSSI
STPSSITGQGTGRENEKGSGKALNAPQSAGLEKQFSMFQTGSGKAVNISSAGLNRAKALL
GLQDIETFPASETKRTSSDQLFPFPSVTVKGTGSTNASLSPFDVKFTSSVSPAEEILNCA
DKPPPIKFHTAGGRSISVSSEALKRARSLLGDPELGCLVDEDDAADPLFSFSKDQKSVDQ
ASTKELNSDTPVSLLSAVKGNGSSSLFTSPLRSTLYHKKSSIKTENLVPASNLMKEFDAV
AKESTSGLDHSIPQHGQLFEKNSTTMDLRENDFASKAKFLEGPSRGPLVDISNSFGAGFA
DRNQNFGRKRKPGGSFVSPFKKPRSANIITPLKRNDSDTANGFSNLAPKLPSQKGKVSVR
YPFHVPRMYMKEYLGKPLPIQSKLESLPDEVRRMNPDTAEIYVFNDKSCSGCIGVESFLE
MLSRSGASMQYVSKKWVTNHYKWIVWKLASYERCYNAKISGKLLTICNVLEELKYRYERE
VNYGHRSAIKRILEGDVTPSSMMVLCISNIYSVCDSPVGSQSSLSSTTENGTCAKVELTD
GWYSIIAVLDTLLSKKLAAGKLFVGQKLRIWGAGLCGWTGPVSPLEASGTTSLLLHINGT
YRAHWASRLGFCKGGGIPLSFMSIKEGGGAVPITLVGISRIYPVLFRERLSNGGFIVRSE
RMEAREMQYFNERRCSVVEGIVSASQREKRDPYIGSDYESEEGARILRILERAAEPELLM
AEMTSEQLNLFSSYQAKLEALRQSDLQKSLERALQDAGLAERDITPFMRVRVVGLTSKST
SLKCCPKEGLITIWNPTEKQQSELAEGQAFAVSGLTPISADSSTLYLQAKGSTAKWLPLS
PLAIEHFEVFFCPRQSIPLNKLSEVRMSREFDIAAVVVFVGQLYTEAHQKKQWVFVADGS
TATLDSNDGSETLMAISFTSPCIRTDSFAPISSNLVGSTVCFCNLIKRARDNINNLWVAE
ATENSTYYLNYDHSHCSHLKDAGASAERWAKISGLRLEKLRGRVLSIISCSET
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgcggacgtggcagttgtacagcgtgtccgggaatgtgttgggatggaaagtggagact
gtaatggaagaagccaccttagccctgccacctactcttcctcagcagcacctccaatct
atgcccgatctcttgcgtcaaggaagctccagattagcggataagcagcactcttccata
tccacaccgtcttccatcacaggccaaggaactggaagagaaaacgagaaaggctcaggg
aaagctcttaacgctccacaatctgctggcttggagaaacaatttagcatgttccagaca
ggctccggtaaagcagtcaatatatcttctgcaggtcttaatagggccaaggcattgttg
ggcttgcaagatattgaaacatttccagcttctgaaacaaaaagaacatcttcagaccag
ctctttccattcccttctgtgacagtaaagggcacagggtctactaatgcttcattgtct
ccgtttgatgttaaatttacctcctcagtttctccagcagaggagattctcaactgtgca
gataaacctcctccaataaagtttcatactgctggcggtagatcaatatcagtttcctct
gaggcattgaaacgcgcaaggagtctgcttggagatccagagctgggatgtcttgtagat
gaagacgatgcggctgatccattgttttctttttcaaaagaccaaaaatctgttgatcag
gcctccaccaaagaattgaactcagatactcctgtttccctcctatcagcagtgaaaggc
aatggttcctcaagcctttttacatctccattgagatcaactttgtatcataagaagtct
tcgattaaaacagagaatcttgttccagcgagtaacttgatgaaggaatttgatgctgtg
gcaaaagaaagcacgagtgggctagaccatagtattccgcagcatggacagctgttcgaa
aagaactcaacaaccatggaccttagagagaatgacttcgcttcaaaagctaaatttcta
gaagggccatctaggggtcctttggtggatatctcaaatagctttggagcaggatttgcc
gatagaaaccagaactttggtcggaagaggaaacctgggggaagttttgtttctccattc
aagaagcctcgaagtgccaacatcataactcctctcaaaagaaatgattccgatactgct
aacgggttctcaaatttagcaccgaaattaccctctcaaaaagggaaggtttcagttcga
tatccattccatgtgccacgaatgtatatgaaggagtatctgggaaagcccctaccaatc
cagagcaagctagagagtctgcctgatgaagtgagaaggatgaatccagatactgctgag
atttatgttttcaatgataaatcatgctcaggttgcattggagtagagtcctttctggag
atgctatctcgatcaggagcttccatgcaatatgtttctaaaaagtgggttacaaatcac
tataagtggattgtttggaaacttgcatcttacgagaggtgttacaatgccaaaatttct
gggaaacttttgacgatctgcaatgtacttgaagaattaaaatacagatatgaaagagaa
gtaaattatggtcatcgatctgcaattaagagaattttagaaggagacgttacaccttct
tctatgatggtactctgcatttccaatatctattcagtttgtgactccccagttggatct
caatcttcattgtctagcacgactgaaaatggaacttgtgcaaaagtcgaactgacagat
gggtggtattcaattattgctgtcttagatacactactatccaagaaattggctgctgga
aagctgtttgttggccaaaagcttaggatatggggagctggattgtgtggctggacaggt
cctgtttcacctcttgaggcatcagggacgactagtttgctgctgcatataaatgggaca
tatagagctcattgggcatctcgtttggggttctgtaaaggtggtggtattccattatca
tttatgtcaatcaaggaaggtggaggtgctgttccaattacattggttggaatttcaagg
atatatcctgttctcttcagggaaaggttaagtaatggggggttcattgtaagatctgaa
cggatggaagctagagagatgcagtattttaatgaaagacgctgtagcgttgtggaggga
atagtctcagcatctcaaagagaaaagagagatccctacattggaagcgactatgaaagt
gaagaaggggcaagaattttgaggatactcgagagagctgcagaaccagaacttctgatg
gcagagatgacttcagagcagttgaacttattttcatcctatcaagcaaagttggaggca
ttgcggcagtctgacctgcagaaatctcttgaaagagctttgcaagatgctgggcttgct
gaaagagacatcactccgtttatgcgagttagagttgttggattgactagcaaaagtact
tcattgaagtgctgtccaaaggaaggcttaatcacaatatggaatccaactgagaaacag
caaagtgagcttgcagagggtcaagcttttgctgtttcagggcttacacctataagcgca
gactctagcaccctttacttgcaagcgaaaggatccacagccaaatggctgcctttgtct
cctctggcaattgagcattttgaggtctttttttgtcctcgccaatcaattccgctgaat
aaattgagtgaagttcgtatgtccagggagtttgatattgctgcggtggtagtttttgtg
gggcagctgtatacagaagctcatcaaaagaagcagtgggtatttgtagctgatggatcc
acagctacgttagattccaatgatggatcagaaaccttgatggccatcagtttcacctca
ccatgcataagaactgactcatttgcaccaataagctctaaccttgtaggatctacggtt
tgtttctgcaatctcatcaagagagcaagagataacattaataacctctgggtagctgaa
gcaaccgaaaattcaacttattatttaaattatgatcattcacattgttctcatctaaaa
gacgccggtgcttctgctgaaagatgggcaaagatatctggcttgagacttgaaaagctt
aggggaagagttctatctataattagctgctctgaaacttga
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