Lycium barbarum (goji berry): 132623231
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Entry
132623231 CDS
T09483
Name
(RefSeq) cyclic nucleotide-gated ion channel 18 isoform X1
KO
K05391
cyclic nucleotide gated channel, plant
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
132623231
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lbb04040
]
132623231
Ion channels [BR:
lbb04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
132623231
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Motif
Pfam:
Ion_trans
cNMP_binding
IQ_SCN5A_C
HTH_17
Motif
Other DBs
NCBI-GeneID:
132623231
NCBI-ProteinID:
XP_060193945
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All DBs
Position
12:103979111..103985025
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AA seq
700 aa
AA seq
DB search
MTRILAKPASQLRDFQQSLKKKSIISSSTDQVDALWSRQILDPNSDIVNRWNYVFLLTCL
ISLFIDPLYFYLPFVSNKACMSTDDEAASQITIYRSLTDLFYVLHILMKFRTAFVNPNSR
VFGRGELVMDPREIAKQYLKNDFLLDLMAALPLPQIVILYVIPATKKTGSGHSKVTLALI
VLIQYVPRLFVIFPLNQQIIKTTGFIAKTAWAGAAYNLLLFMLASHVAGASWYVTSIARQ
YSCWSNECRKERDAVPPCVPEFLDCSSFTDSYVRDYWRNSTQVLAKCDAINDEDSGFKFG
IFADAFTNEVASSSFMEKYLYCLWWGLRNLSSYGQNLNTSTYIGETLFSISISIIGLVLF
AQLIGNMQTYLQSMTVKIEEWRIRKRDIEEWMRHRQLPEDLQERVRRFDQCKWLATRGVN
EEEILQSLPLDLRRQIQRHLCLNLVRRVPFFEQMDDQLLDAICERLVSSLSIMGTYVVRE
GDPVNEMLFIIRGQLESSTTNGGRSGFFNSTTLRPGDFCGEELLTWALLPNSTQLPSSTR
TVRALSEVEAFALRAEDLKFFAVQFKRLHSKKLQHAFRYYSYQWRTWGACFIQAAWRRYR
KKKMENELALQESYYYMQDPDGGGNYDEQSYEAFDDVGLEQQPLVDSGRSSQQLGATILA
KRFAANTRRGLEQKIQTADSSSSLKMPKLFKPDEPDFSTD
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgactagaatacttgcaaagccggcgtcccagctccgcgatttccagcaatctctgaag
aaaaaatcaataatctcctcttcaactgatcaggtcgacgcactatggagtcgccaaatt
ctggatccaaacagcgacattgtaaatcgctggaactatgtattcctcctcacatgtctc
atctctcttttcatcgaccctctttacttctacctgcctttcgtcagcaataaagcttgt
atgtctactgatgatgaagcggctagtcagattactatctatcgttctctcactgactta
ttttacgtcctccatattctcatgaagtttcgcacggcttttgtcaatcctaactctcgg
gtttttggccggggtgagcttgtcatggaccctcgagaaattgcaaagcaatatctcaag
aatgatttcttgcttgatttgatggccgctcttcctctgcctcaaattgtcattctgtat
gtaattcccgcaactaaaaaaactggatctggtcattccaaagttactcttgcccttatc
gttctcatccaatatgtgccaaggttattcgttattttcccgctaaatcagcagatcatc
aaaactacaggttttattgctaaaacagcctgggcaggagcagcttacaatctcctcctt
ttcatgttagctagtcatgtggcgggagcttcctggtacgtgacatctatagcaagacag
tactcttgctggtcaaatgaatgtaggaaggagcgtgatgcagttccaccatgcgtgcct
gaatttttagactgtagcagttttacggatagttatgtacgcgattactggcgaaacagc
acgcaagttcttgcaaaatgtgatgctataaatgatgaagattctgggtttaagtttgga
attttcgctgacgcctttactaatgaagtggcttcatcatcattcatggagaaatattta
tactgtctttggtggggtctaagaaatttgagttcatatgggcagaatttgaatactagc
acttatattggcgaaacattattcagcatttccataagcatcattggtttagttctcttt
gcacagctaattggaaacatgcagacttatctgcaatctatgaccgtaaaaattgaggaa
tggagaattagaaaaagagatatagaagaatggatgaggcaccgccagttgcctgaagac
ttgcaagaacgtgttcgccgttttgatcaatgtaaatggcttgctacaagaggagttaat
gaagaagagatcttgcaatctttgcctttggatcttcgtcgtcaaatccaaagacaccta
tgccttaatcttgttcgacgagttccattttttgaacaaatggatgaccagctgcttgat
gctatatgtgaacgcctagtctcatccctgagcataatgggaacctatgttgttcgagaa
ggtgatccagtgaatgagatgctctttatcatcagggggcaactagagagttccacgaca
aatgggggaagatctggattcttcaattctaccacccttaggcctggtgacttttgtggt
gaagaattactgacttgggcattactgcctaactcaactcagttgccttcttcaactcga
actgtgagagcactttctgaagttgaagcatttgcacttcgagctgaagacctgaaattt
ttcgctgttcaatttaaacgtcttcacagcaagaagctacagcatgcatttaggtactat
tcttatcagtggagaacatggggtgcttgctttatacaggctgcatggagaaggtatagg
aagaaaaagatggaaaacgagttggctctacaagagagctattattatatgcaagatcct
gacggtggagggaactacgatgagcaaagttatgaggctttcgatgatgttggtcttgag
cagcaaccattagtagacagtggtcgtagttcccaacaacttggagctacaattttggcc
aaaagatttgctgctaatacgagaagaggactagaacagaagattcagacggctgattct
tcttccagcttaaaaatgcccaagttgttcaagccagatgagcctgatttttctacagat
tga
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