Lycium barbarum (goji berry): 132623360
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Entry
132623360 CDS
T09483
Name
(RefSeq) rRNA biogenesis protein RRP5 isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
lbb
Lycium barbarum (goji berry)
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lbb03009
]
132623360
Ribosome biogenesis [BR:
lbb03009
]
Eukaryotic type
90S particles
Other 90S particles
132623360
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
OB_RRP5
OB_PDCD11
Spt6_S1
Suf
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
PRP6_TPR
NRDE-2
HAT_Syf1_M
UTP6_C
Motif
Other DBs
NCBI-GeneID:
132623360
NCBI-ProteinID:
XP_060194088
LinkDB
All DBs
Position
12:61494470..61539561
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AA seq
1912 aa
AA seq
DB search
MAPPKSQSKKVSKPALRNVDKGKSKDKISIEDEVPDFPRGGGSSLSREELDEVRGEVDAE
FEAEERLLKKRKKQKRTSTSSTTQDDDLGSLFGGGINGKLPRFPNRITLKNICPGMKLWG
VVSEVNEKDIVVSLPGGLRGLVRPSEALPPFLHHQPKLLETDTNFLSSVYHVGQLVSCIV
LHLDDDKKESGKRKIWLSLRLALLHKNLTLDVIQEGMILSAYVKSMEDHGYIIHFGLPSF
SGFMPKESENVEVKIRSGQLVQGVVKSIDRTRKVVYLSSDPDAVSKCVTKDLKGISIDLL
VPGMMVNASVRSILENGIMLSFLTYFTGTADMFNLQQTFPSSNWKVDYPQNKKVNARILF
IDPSTRAVGLTLNPHLVHNKAPPTLIKVGDIFDQSKVIRIDRGLGLLLEIPSSPVPTPAY
VNVSDVADKEVKKLEKNFKEGKLVRARVLGFRHLEGLATGVLKTSAFEGSVFTHSDVRPG
MVVKAKVIAVDSFGAIVQFSSGVKALCPLRHMSEFEIVKPRKKFQVGAELVFRILGCKSK
RITVTHKKTLVKSKLEILGSYTDATEGLTTHGWITKIENHGCFVRFYNGVQGFAPRSELG
LDPGCEISSMYHIEQVVKCRVTSSNPASRRINLSFTTTPSRVFSNELVKPGIVVSGVVER
VTPHGIVLDVTAQGHFKGSISPQHLADHCGHAELMKSALRPGYEFDQLLVLDVEGSNLVL
SAKHSLVASAQQLPLDVNQVHLNSVLHGYICNIIESGIFIRYLGRLTGFSPRNRATDDRR
SSLSEVYQIGQSVRTNVVDVNSETSRITVSLKQSLCSSTDASFIQEYFLVEEKIAKLQLV
DSGGSDLRWVEQFNLGSTVKGKVHEIKEFGVVVSFQKYDDVFGFISHYQLSGISVETGSS
ICTAVLDVSKIERLVDLSLKPAFVNKSKKETTNNQAQKKRKREALGELEVNQTVNAIVEI
VKENYLVVSLPSYNNTLGYASRADYNTQNLPHKSVANGESVIATVMALPSPSTSGRLLLL
LKSISEASETSSSKRAKRKSSYNVGSLVQAEITEIRPLELRLKFGSSFHGRVHITEVSDD
NYAEAPLSNFRFGQSLTARIISKFNMSESVKRGYQWELCIKPSTLAGEMITWPRSGEIEP
VKNLSYSTGQLVSGFVYKVDNEWAWLTISRDVKAQIYILDSSSEPNELDEFQKRFSVGRA
FSGYVLSCNKEKKLVRLIPHPLLVDPERPACQRDGLTDHSSESMAFHIREGSVLGGRISK
ILPGVGGLLVQIDPHLYGKVHFTELGDPGVADPLSGYHEGQFVKCKVLEITHSGKGTVHI
DLSLRSISDRTQKQELSALNDTVDFAVLMEKIEDLQPNTMVQAYVKNVTPKGCFVMLSRK
VDAKVLLSNLSDRYVENPEKEFPVGKLVIGKVVSVEPLSKRVEVTLRTSNAVGASKSDKD
ALNNLTVGDVISGRVKRVEPYGLFITVDHTNMVGLCHVSEISDNHVDNIDSIHKAGDRVR
AKILKVDKERHRISLGMKNSYFNDATSGEIDTKLSSGDALSIGIESTPSPERSSQGRENL
DGESVDGKDLFLAEVESRASIPPLEVPLDDTENLDMGDVINQDSGDATNLDTSDDKNKKH
AAKKAKRLREQEIIAAEERLLEKDIPRDEDEFEKLVRSSPNSSFVWIKYMAFVLSLADVE
KARSIAERALRTINVREELEKLNVWVAYFNLENEYGNPPEEAVAKVFQRALQYCDPKKVH
LALLGMYERTEQHKLTDELLNKMVKKFKHSCKVWLRRVQWLLKQSQDGIQSVVNRALLSL
PPHKHINFITQTAILEFKCGVPDRGRSLFEKMLREYPKRTDLWSVYLDQEIRLGDADVIR
ALFERAITLSLPPKKMKFLFKKYLEYEKTLGDDERMEAVKRKAMEYVESSLA
NT seq
5739 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgccgaaatctcaaagcaaaaaagtttcgaaacctgctttgaggaatgttgac
aagggaaaaagcaaagataaaatctcaattgaagatgaagttcccgacttccccagaggt
gggggaagtagtttgagcagggaagagttggatgaagttcgaggtgaggtagatgctgag
tttgaggctgaagagagattgttgaagaagagaaagaagcaaaaaaggactagtactagt
agtactacccaagatgatgatttgggttccctttttggcggtggcatcaatggaaaattg
cctaggtttcctaacaggatcaccttaaagaatatatgtcctggaatgaagctgtgggga
gtggtttctgaagtaaatgagaaagatattgttgtcagtctcccaggaggcttgcgcggc
ttagttcgaccatctgaagcacttcctcctttcctccaccatcaaccaaaactgttggag
acggacaccaattttctttctagtgtatatcacgtcgggcagctggtttcttgcatcgtc
ttgcacttggatgacgataagaaagaatcagggaagagaaagatttggctttccttgcgt
cttgctttattgcacaagaacttaacacttgacgttattcaagaaggaatgattcttagt
gcatacgtgaaaagcatggaagaccatggctatataattcatttcgggttgccttccttc
tcaggatttatgccaaaagaatcagaaaatgtggaagttaagattagaagcgggcagctg
gtacaaggggttgttaaaagtattgatagaacacgtaaagttgtttatttgagttctgat
cctgatgctgtctctaaatgtgtgaccaaggatcttaagggtatctcaattgatcttctc
gttccaggcatgatggttaatgctagtgtgcgttcaatacttgaaaatggaattatgtta
tcattcctcacgtactttactggaacagctgacatgttcaatctgcagcaaactttcccc
tcttccaattggaaagttgattatccgcaaaataaaaaggttaatgctcggatactattt
attgatccctcaactagagctgttggtttgacattgaatcctcacctggttcacaacaag
gctcctcctacccttatcaaggttggagatatttttgatcaatcaaaagtgatcaggatt
gataggggtttgggtcttttgctggaaattccctcttctccagttccaactccagcatat
gttaatgtatcggatgttgccgataaggaagtgaaaaagctggagaaaaatttcaaggaa
gggaaacttgttcgcgccagggttcttgggtttaggcatctagaaggacttgctactggg
gttttgaagaccagtgcatttgaagggtcagttttcactcattcagatgtcagacctggg
atggtggtaaaagctaaagtcattgcagtagacagctttggtgccatagtacaattttct
agtggtgtgaaagcactttgtcctcttcgtcatatgtcagaatttgaaatcgtaaaaccc
aggaaaaaattccaggttggagcagaattagtctttcgtattcttggttgcaagtcaaag
agaatcactgttacacacaagaagacactagttaaatcaaaacttgaaattcttggttct
tatactgatgctactgaaggactaacaacacatggatggataactaagattgaaaaccac
ggttgctttgtccgcttttacaacggagtacaaggatttgcccctagatctgaacttgga
ctagatccggggtgtgaaataagttccatgtatcacattgaacaagtagtgaaatgtaga
gttaccagttctaatccggcttcacgtcgtattaacctcagtttcacgacaacaccctca
agggtattcagcaatgaactggtcaaaccaggaattgttgtttctggagtggttgagcga
gtaactcctcatggaattgtcctagatgttactgctcagggtcattttaagggctcaatc
tcaccccaacatttggctgatcactgtggccatgctgagttgatgaagtccgccttgagg
cctgggtatgaatttgaccagcttttggttcttgatgttgagggcagcaatttagtactc
tctgcaaaacattctcttgtcgcttcagctcagcagcttccgctggatgttaatcaagtc
catcttaactctgtgctgcatgggtatatttgtaatataattgaaagtggtatcttcatt
cgctaccttgggcgcttgactgggttttctccaagaaacagggctactgatgacagaaga
tctagtctttctgaagtttaccagattggacagtctgtccgcactaatgttgttgatgtc
aacagtgaaacaagtcgaattacagtttctttgaagcagtctctttgctcttcaacagat
gcatcctttattcaagaatactttcttgtggaggagaagattgcgaagctgcagttggtg
gactctggaggttccgacttaagatgggtggaacaatttaatcttggtagcactgtgaag
ggaaaagttcatgaaataaaggaatttggtgttgtagtaagctttcagaaatatgatgac
gtttttggttttatttcccactatcagttaagtggaatctctgtggagactggctcaagt
atttgcacagcagtacttgatgtttccaagatagaacgcctagtggatctgtctttgaag
ccagcttttgtgaataaatcaaagaaagagaccactaataatcaagcccagaagaaacgc
aaaagggaagcgctaggagaattggaagtaaatcaaactgtaaatgcaattgtggagatt
gtcaaagaaaattacttggttgtttcactaccatcatataataacactcttggatatgca
tcgcgagctgattacaatactcaaaatcttcctcataaatcagttgccaatggagaaagt
gtcattgccactgttatggcccttccgtctccttcaacaagtgggagattgctgctgctg
cttaagtctatcagtgaagctagtgaaacgtcgagttccaagagggctaaaaggaaatct
agttataatgttggatcgctggttcaggcagagattactgaaatacggccacttgaactg
agactaaaatttgggtccagtttccatgggagggtgcacataacagaggtatcagatgac
aattatgctgaagctccacttagtaacttcagatttgggcagtctcttactgcaaggatt
atttcaaagttcaatatgtcagaaagtgttaagagaggctatcagtgggagctatgcatt
aaaccatccacacttgcaggtgaaatgataacatggccaagatctggtgaaattgaacct
gttaaaaatttgagttattcaactggccagctcgtttctggctttgtgtacaaagttgac
aatgaatgggcttggctaacgatatcccgagatgttaaggcccagatctacatcttagat
agctcaagcgagcctaatgagctagatgaatttcagaaaaggttctctgtcggcagggct
ttctctggttatgttttaagttgtaataaggagaagaagttggtgcgcttgattccacat
ccactgttggttgacccagaaagacctgcctgtcaacgagatggtctcacagatcattca
agtgaaagtatggcatttcatattcgtgaaggcagtgttttgggtggcaggatttccaaa
atccttcctggtgttggtggattgcttgttcagattgatcctcacctatatggtaaggtt
catttcactgaacttggagatccaggggttgctgatccgctgtctggatatcacgaagga
caatttgtaaagtgcaaagtactggagattactcattcaggcaagggaactgttcatatt
gacctctcgctgcggtctatttcagacagaacccagaagcaggaactctctgcactcaat
gatacagtggattttgctgtgttaatggagaagattgaggatcttcaaccaaatacgatg
gtgcaggcatatgtgaaaaatgtaacaccgaaaggatgcttcgtaatgctttctcgcaaa
gttgatgcaaaagttctcctgtcaaatttgtctgatcgttatgtggaaaatccagagaaa
gaattccctgtagggaaacttgtcattggcaaggtggtctccgtggagccattgtcaaag
cgagttgaagtcactctaaggacatcaaatgcagtcggtgcttccaagtctgataaagat
gctctaaataatctgactgttggggatgtcatatctggcagagtcaagcgagttgaacca
tatggtttgtttatcacagttgatcacacaaatatggttggattgtgccatgtttcagag
atctctgacaatcatgtcgacaatattgactctatacacaaagctggggatagagtgagg
gcaaagattttgaaggtggataaggaaagacatcgaatttcacttgggatgaagaattca
tattttaatgatgctacaagtggtgaaatagatacaaagctgagttctggagatgctctt
tccataggtattgagtcaactccttcacctgagaggagctcccaaggacgggagaatctt
gatggtgaatctgttgatgggaaggacctgttccttgctgaagttgaatctcgggcatcc
ataccacccctggaggtcccacttgatgatacagaaaatttggatatgggtgatgtaatt
aatcaagactcaggtgatgctaccaatttagatacttcagatgacaagaacaagaaacat
gctgcaaaaaaagcaaaaagattgagggaacaagaaattatagcagctgaggaaagatta
ctggaaaaagatattcccagagatgaagatgagtttgagaaattagttagaagttcccca
aatagcagctttgtctggataaagtacatggcattcgttctgtctttggctgatgttgag
aaggcacgatcgattgcagaacgggctttaaggacaataaacgtgcgagaagagttggag
aagctgaatgtttgggttgcctattttaatttagaaaacgagtatggaaatcccccagag
gaagctgttgcaaaagtattccaaagagcattgcagtattgtgatcccaaaaaagtgcat
ctggccttgttaggaatgtatgagaggacagagcaacacaaactcacagatgaacttctt
aacaagatggttaagaagttcaagcattcgtgcaaggtttggctcaggcgggttcagtgg
ctattgaaacaaagccaagatggaatccagtcagtggtgaatcgtgctttgctaagtctt
cctccgcacaaacatattaactttattacacagactgcaattctagagttcaagtgtgga
gttcctgataggggtcgctccttgtttgagaaaatgcttcgtgagtatcctaagagaact
gatctgtggagcgtttatcttgatcaggagattcgactgggagatgcagatgtgatccgt
gccttatttgaaagggcaattactctcagtcttccacccaaaaagatgaagttcctcttt
aagaagtatcttgagtatgaaaagacgcttggtgatgatgaacgaatggaggctgtgaaa
aggaaagcaatggaatatgttgagagcagtcttgcttga
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