Lycium barbarum (goji berry): 132623658
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Entry
132623658 CDS
T09483
Name
(RefSeq) paired amphipathic helix protein Sin3-like 2 isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
lbb
Lycium barbarum (goji berry)
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lbb03036
]
132623658
Chromosome and associated proteins [BR:
lbb03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
132623658
REST complex
132623658
Heterochromatin formation proteins
Other heterochromatin formation proteins
132623658
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAH
Sin3a_C
Sin3_corepress
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
132623658
NCBI-ProteinID:
XP_060194426
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Position
12:66931655..66942459
Genome browser
AA seq
1363 aa
AA seq
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MKRFRDDVCANPQFKRPFGSSRGESYGQSQLPGSGAGGGGSGSGGGGGGTGEGGAGASVS
TQKLTTNDALSYLKEVKDMFQDQREKYDLFLDVMKDFKAQRIDTAGVIARVKDLFKGHPN
LILGFNTFLPKGFEITLTDEEQAPQKKTVEFEEAISFVNKIKKRFQNDDHVYKSFLDILN
MYRKEHKGITEVYQEVAALFEDHPDLLDEFTRFLPDTSGTASATQTSFGRPSFNRYDERS
SAIPLLRQPHMDKQRFRRDRIISSHAERDPSVERPEMDDDKTMVKLHKEQKRRAEKENRD
RRSRDQDYREPDNENNGDLGMHRIADKRKSGRKVEEFGGTYDDKDGVKNIYSQEFTFCER
VKERLRSPTDYQAFLKCLHIYSTEIITRKELQSLVADLLGKFPDLMEGFNEFLERCERID
GFLAGVMSKKSLWNEGHTSKSVKEEEKDKEQKREIDGKEKDRYKEKYWGKSIQELDLSNC
QSCTPSYRLLPEDYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFR
CEDDRFELDMLLESVSSTTKRAEELLNSLNDNSVGVDGPARIEDHFTALNLRCIERIYGD
HGLDVMDILRRNPSLALPVVLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFY
FKQQDSKDLSTKSLLAEIKEIKDKKQKEDDMILAIAAGSRHPISPHLDFEFADPEIHEDL
YKLIKYSCEEVCSTEEQLNKVLRLWTTFLEPIFGVTYRLHGSETTDDDVLSKHLGLKNNG
TSIGESDGSPRADATTTKSKQSKVVCNGDANSSPQRVNSSRTSFTNTDAHPKEDGLAAAG
EHLISSDAATALGADNVCARLESTSGRSTRPSNGTAEDGQGAKSNTDNIPTSECDTSRSL
PLVNGGFAEGSRINGYNADSVDPSKHEKEEGELSPNGDFEEDIFGFRDGASRNRSMQYQS
GGAEVVGRQDAAGDNDADADDEDSENVSETGEDVSGSESAADECSREEHEEEDDGEHDEL
NGKVESEGEAEGTSEANFVGGDGTVCQMSERFLLTSKPLAKHVASPQFGGVKSDLQVFYG
NDDFYVLYRLHQILYARLLSAKWNATSSESKWRTGKDTGSDPYARFMSALHSLLDGSADN
AKFEDECRSIIGNQSYVLFTMDKLIYKLVKQLQTVSSDELDGKLLQLYEYEKSRKPEKYV
DSVYYENAHVLLHEENIYRFNCTSSPTRLSIQLMDDGSEKSEVVAVYIDPSFAGYLHNDY
LSVEHGKKESSAVMLKRSVSRNKRKRTDHDVPSALCMVMENIILVNGLECKMASNSSKIS
YVLDTEDFFYRLGRKRRNISASRLSCHGQARVERFQRVLTSSL
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgattcagggatgatgtttgtgctaatcctcaatttaaacgcccatttggttct
tcgcgtggagaatcatacggccaatcacagcttcctggaagtggcgctggtggaggaggc
agtggcagcggaggcggcggcggcggcaccggtgaagggggtgctggtgccagtgttagt
acccaaaagttgacaactaatgatgcattatcttatttgaaggaagttaaggacatgttt
caagaccaaagggagaaatatgacttgttccttgatgttatgaaagactttaaggctcaa
agaattgacactgcgggtgtcatagcaagagtcaaagacttgtttaaaggccatccaaat
ttgatccttggcttcaatactttcttgcccaagggctttgagataaccctcactgatgaa
gagcaggctcctcaaaagaaaacagttgagtttgaagaagcaatcagctttgtgaacaaa
ataaagaaacgtttccaaaatgatgatcatgtgtacaagtctttcctcgacattttgaac
atgtataggaaggaacacaagggcatcactgaggtgtaccaggaggttgcagctcttttc
gaagaccacccagatttgctggatgagttcacgagattcttgccagatacttcaggtact
gcatcagcaacacaaacgtcgtttggccgcccttccttcaatcgttatgatgagaggagc
tctgctattcccttgcttcggcaaccacacatggacaaacaacgtttccgccgggatagg
attatcagttctcatgcagaacgtgatcctagtgttgagcgccctgagatggatgatgat
aaaacaatggtgaagttgcataaagagcaaaagaggcgtgctgaaaaagagaacagggac
cgcagaagtcgcgatcaggattacagagaacctgataatgagaataatggagatttaggc
atgcaccgcattgctgataaaaggaaatctggtcggaaggttgaagaatttggaggcact
tacgatgataaagatggtgtgaaaaatatttatagccaagagttcactttctgtgaaaga
gtaaaggagagactacgcagtccaactgattaccaggcattcttaaagtgcctccatatt
tatagtacagaaataattacaagaaaggagttacaaagtttggttgctgatttactagga
aaattccctgatcttatggaggggttcaatgaatttttggagcgctgtgaacgaattgat
ggatttctcgcaggtgttatgagcaaaaaatctttgtggaatgaagggcatacatcaaag
tcagtgaaggaggaggagaaagacaaagaacagaagcgtgaaattgatggtaaagaaaag
gaccggtacaaggagaaatactggggaaagtccattcaagagcttgacctttcaaactgt
cagagctgcacacccagttatcgacttcttcctgaagattatccgatacctacagcgagc
caaaggtcagagcttggggctcaagtattgaatgatcactgggtatctgtgacctcagga
agtgaggactactcattcaagcacatgcgtagaaaccagtatgaagaaagcctgtttcga
tgcgaagatgataggtttgagctagacatgcttttggagtcagtgagttcaaccactaag
cgtgcagaagagttgttgaattcccttaatgataattcagttggtgtggatggtcccgcc
cgtattgaagaccacttcacagcattgaacttaaggtgcattgaacgtatctatggtgac
cacggactggatgtgatggacattttgcggagaaacccgtctcttgcgctgcctgttgtg
ttaacccgcttgaagcagaaacaggaggagtggacgaaatgtcgctcagacttcaacaaa
gtttgggctgaaatttatgctaagaaccattacaagtcgcttgaccaccgaagtttctat
ttcaagcaacaagattcaaaggaccttagcacaaaatccttactggcggagatcaaagaa
attaaggataaaaagcagaaagaagatgacatgattcttgctattgctgctggtagtaga
catccaataagtcctcatcttgattttgaatttgctgatcctgaaattcatgaagacctg
tacaaacttatcaagtattcttgcgaagaggtttgttccacagaggagcaattaaataaa
gtactgaggttatggaccacctttcttgagccaatctttggtgttacttatcgtcttcat
ggctctgagactactgacgatgatgtcttgtcgaagcatcttggtttgaagaacaatgga
actagcattggcgaaagtgatggaagtcctcgtgcagatgctaccactactaagtctaag
caatcgaaagttgtctgcaatggagatgctaattcctctcctcaacgagtaaattcttcc
aggacaagcttcacaaatacagatgctcaccccaaggaagatggattagcggcagctggt
gaacacttaattagttctgatgcagctactgccctcggagcagataatgtttgtgcaaga
ttggaaagtacttcagggcgcagtacacgacctagtaatggcactgctgaggatggccaa
ggagccaagtctaatactgataacataccaacttccgagtgtgacacttcaagatcactt
cccttggtaaatggcgggtttgctgaaggttctagaatcaatgggtataatgctgattca
gttgatccctccaaacatgagaaggaagaaggtgagctgtcgcctaatggggactttgaa
gaggacatttttggttttcgagatggtgcctcccgtaatagaagtatgcaatatcaatct
gggggtgctgaagttgttggtcgtcaggatgctgctggcgataacgatgcagatgctgat
gatgaagatagtgaaaatgtttctgagacaggagaagatgtttcaggtagtgagtccgct
gctgatgagtgctctcgggaggagcatgaggaagaagatgatggagagcatgatgagctt
aatggtaaagttgagagtgaaggtgaggctgagggcacgagtgaagcaaactttgttgga
ggtgatggcactgtgtgtcaaatgtctgaacggtttttgcttacttcgaagcctcttgct
aaacatgtggcttcacctcaatttgggggtgtcaagagcgacctgcaggtcttttatgga
aatgacgatttctacgtgctttataggcttcatcagattttgtatgcaaggttattatct
gcaaagtggaatgcaacatcatctgaatcaaagtggagaactggaaaggatactggctct
gatccctatgccagattcatgagtgcactgcatagtttgctagatggatctgcagataat
gcaaagtttgaggatgaatgcagatcaatcatcgggaatcagtcgtatgtgctatttact
atggacaaactgatatataaactggttaagcagcttcaaactgtttcaagtgacgagctg
gacggcaagctgcttcagttatacgaatatgaaaaatcgcggaaacctgagaagtatgtt
gattcagtttattacgaaaatgctcatgtcctcctccatgaggagaacatttaccggttt
aattgtacatcttccccgactcgtctgtccatccagttgatggatgatggaagcgagaag
tctgaagttgttgcagtttatatagaccccagttttgctggttatctgcataatgattat
ctttctgttgaacatgggaagaaagagtcgtccgcagttatgctaaagagatctgtgagc
agaaacaagagaaagcgcaccgaccatgacgtaccttctgccctgtgcatggtgatggaa
aatattatactcgtaaatggtttggaatgtaagatggcttcgaattcatcaaagatttct
tatgtactggacacagaggatttcttttaccgtcttggaaggaaaagaagaaacatttct
gctagcagattatcatgtcatggccaggcgagagtagaacgctttcaacgtgttttgacg
tcctcattatga
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