Lycium barbarum (goji berry): 132623877
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Entry
132623877 CDS
T09483
Name
(RefSeq) pre-mRNA-processing factor 39-2
KO
K13217
pre-mRNA-processing factor 39
Organism
lbb
Lycium barbarum (goji berry)
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lbb03041
]
132623877
Spliceosome [BR:
lbb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
132623877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
TPR_14
HAT_Syf1_CNRKL1_N
Motif
Other DBs
NCBI-GeneID:
132623877
NCBI-ProteinID:
XP_060194669
LinkDB
All DBs
Position
12:78650328..78664885
Genome browser
AA seq
1309 aa
AA seq
DB search
MALKDLSCQITKDKSTFRPRNKERTYLFQAIFCPFQFPPAGDATHTQSALIGGFQQTSPA
MELHNHNAPDGPHLVQVHNERLKDMISGGSEDLDSWNSLISEIEKTYPDDRNTICLAFDS
FLSKFPLCHWNWKRYAYHEARLCNAEKAVEIFERAVESTPFSVGLWVDYCTFAMSSFEDP
FDIRRLFTKGISLVGKDYFCHVLWDKYMSFEFSQEKWGSLALVYVQALCFPTKKLHKYYE
NFKKLVTNLEEEILHLSDDSRDVQLKELSSATAVLLNKEIVQVVKDLQDPSDDSVRLKAL
YKYRYCGDQLYQKACQLEEKIKSFESNIQRRYFQATPLDNDELKNWHDYLDFIEKQDDFD
WALKLYERCLISCANYPEFWIRYVDFMETKGGRELSMFALERATKVFSKNVPEIHLFTAR
YMEQIGDPDGARASFPPINTDWDSCFIQYVTNRANMEKRLGNCSAASDIYKRAINMVVKE
QKLQCIPMLYIGYYRLTHMITASLEVARDVIIDGIKRFPGCRLLYEELIRFAMAHEGTKQ
LSIVDSVIANAISPVSDVSQDLDIKDRESISILFLEFVDLCGSISEIRKAWSRHIKLFPQ
FIRTNTSSKHIGTEKSSLNSFTEQRRNISYVLVNQPSKGPSSGHMIQLSKGEQAQLPPLK
DGKQPDQLSAEPSLAVVKGKDATGKQEQISPEVEDLSSGNGSGKNELSFDPLVQSKDDSS
TPMELSHGPSQQRRDDLAGPMDFSYDSIPQPGEDVSKSPGPVLDFKEPSRPLSVLEASQE
RPSSEIINQDQDVELEQPPVPVSLENLSLISGERESQDLVAMHSDDLKGGEEIPSSSTGR
PPDPVNDGDGPASCSSPGPVTAGSSQQIYDTAAVPESGSSKVSNQPAGYDQQQQSQRADS
QEPRLLDSQGDSQFQQVLDKAPVHSQSGTSQGNIPGNECWTLNNMPQQISMSGNHLQASS
SPVSYSQPSPAHYSAHNSQQIGPNPHHEALNQTSQHISLSENHPQMSSPHASFSEPSTPQ
HSGQSSQQIGPSHHQEALNQTSQHYYQQQHLSHGQYQQHQLQMQQPYTSIQQQQMHPHPS
QLLYQQQQLNLQQQQQQSQQQTLLLQQQQYFQQIQSLPYQQQQYLHQLQYSQQAQQLWQQ
QFQQQAQQMQPQEGQQTQQQLEQYRQSQELAYQMQQHGYQLLMHQYQVRQQGCQSMQQQQ
QWQQQGNLQLQQYSHLQQQQYHHRDQQTDEEYNQTHQGKHVAVQYSSGTPAAESESPEIA
KEPHSAEKFRRSVSPYRRPPARGISPSHSTATLASEASSFSRTNSSRDQ
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
atggcactcaaagaccttagttgtcaaatcaccaaagacaaaagtacttttaggccaaga
aacaaagaaaggacatacttgtttcaggccattttttgccctttccagtttccacctgcc
ggagacgctacacacacacaaagtgcacttattggtggcttccaacagacttctccagct
atggagctacacaatcacaatgctcctgatggacctcatcttgttcaagttcataatgaa
agacttaaggatatgatttctggaggctcagaagaccttgattcctggaactcactgata
tcagagattgagaaaacctaccctgatgatagaaatacgatttgtttggcttttgactcc
tttttgtctaaatttccactgtgccactggaattggaaaagatacgcttatcacgaggca
cggctatgtaatgctgaaaaagctgttgaaatctttgagcgagctgtggaatcaacacca
ttttctgttggtctgtgggttgactattgtacctttgctatgagttcgttcgaggatcca
tttgatattcgtaggttatttaccaaaggaatctcccttgttgggaaggactacttctgt
catgtcttatgggacaagtacatgtcctttgagttctctcaggagaagtggggttccctt
gctctagtttatgtacaggctctatgctttcccacaaagaagttgcataagtactacgag
aattttaagaagcttgtaaccaatttagaagaggagattctacatctcagtgatgacagc
cgtgatgtacaactaaaagagctatccagtgcaacagctgtgttattgaataaagaaatt
gttcaagttgttaaggacctccaggatcctagtgatgattcagtcaggttgaaagcacta
tataagtacagatactgtggagatcagctgtaccagaaagcttgtcaactagaggaaaaa
attaaaagttttgaatcaaacatccagaggcgatatttccaggcaactcctcttgacaac
gatgagctgaagaactggcatgattatctcgacttcatcgaaaaacaagacgattttgat
tgggccctaaaactttatgagaggtgcttgatatcctgtgccaactaccccgagttctgg
atacgttatgtggatttcatggagactaagggaggacgagagctatcgatgtttgcttta
gaacgagcaacaaaagttttctcaaagaatgttccagaaatccatctttttactgctaga
tatatggagcaaattggagatccagatggtgctcgtgcttcctttcctcctattaataca
gattgggactcctgtttcattcaatatgttaccaatcgagccaatatggaaaaacgtctg
ggaaattgctcagctgcttctgatatctacaaaagagcaattaatatggtagtgaaggag
cagaaattgcaatgcattccgatgctatacattggttattatcgtctaacacacatgatc
actgctagtctggaggttgcaagagatgtaataattgatggaataaagcgtttccctggt
tgcagacttctttatgaggaattgataagatttgcgatggcacatgaaggaactaagcaa
ctgagcatagtagactctgtcatagctaatgcaatctctcctgtgtcagatgtatcccaa
gatttggatataaaagatcgagagagtatttctatattatttttggagtttgttgatctt
tgtggttctatctctgagataagaaaggcatggagtcgtcacatcaaattgtttcctcag
ttcataagaaccaatacctcatcaaaacacataggtactgagaagagttcactgaacagc
tttactgaacaaaggagaaacatttcctatgtcttagttaatcagccatcaaaaggacca
agctctggccacatgatccagctgtccaaaggagagcaggcacagttaccgccgcttaaa
gatgggaagcaaccagatcagctttctgcagagccgtctctagctgtggtcaagggaaaa
gatgcaactggtaaacaagaacagatatctcccgaagtggaagatttatccagtggaaat
ggctctgggaaaaatgagttatcttttgaccctcttgttcaatcaaaggatgattcctca
acgccaatggaactaagtcatggtccatcacagcagaggagagacgatttggctggacca
atggacttctcttatgattccataccgcaacctggagaagatgtatccaagtctcctggg
ccagttctggactttaaagagccctcaaggcccctttctgttttagaagcctcacaagaa
cgtccaagttcagaaattatcaatcaagatcaggatgttgaacttgaacagccaccggtg
ccggtttctttggagaatctttccttaatctctggggaaagggaatcccaggatttggtc
gccatgcattctgatgatcttaaaggtggtgaagaaattccctcatcaagcacaggcaga
ccaccagatcctgtaaatgatggagatggaccagctagctgttcatctccaggtcctgtt
actgcgggaagttcacagcaaatatatgatacagcagcagttcctgagagcggtagttca
aaggtgtccaatcaaccggcaggatatgatcagcaacagcaatcacaacgagctgattcg
caagaaccgcgcttgcttgattctcagggtgattcgcagttccaacaggtcctggataag
gctcctgtccatagtcaatcgggtacttctcaggggaatatcccgggtaatgaatgctgg
acattaaataatatgccacagcagatctccatgtctggaaaccatctccaggcgtcttcc
tcgcctgtttcttattctcaaccaagtccagctcattattctgcgcacaatagccagcaa
attgggcccaatccccatcacgaagccttgaatcaaacatcacaacacatctccctatca
gaaaaccaccctcaaatgtcttccccacatgcttctttttctgaacctagtacacctcaa
cattctgggcagagtagccagcaaattgggccttcacaccaccaggaagcattgaatcaa
acatcacaacactattaccagcagcagcatctttcgcacggacagtatcaacagcatcag
ttgcaaatgcaacagccctacactagtatacagcagcaacagatgcatccacatccaagt
caactgctgtatcagcagcagcagcttaatctgcaacaacaacagcaacagagtcagcag
caaacacttctattgcaacagcaacagtatttccagcaaattcagtctttaccatatcaa
cagcagcaatatcttcaccagctacaatattcacagcaggcacagcaactatggcaacag
caatttcaacagcaagcacaacagatgcaaccacaggaaggccagcaaacgcagcagcag
ctggagcaatatcgtcagtcacaagaacttgcataccagatgcaacagcatggttatcaa
ctactcatgcaccagtaccaagtacgtcaacaaggatgtcagagcatgcaacaacaacaa
caatggcaacaacagggaaatctccaattacagcaatactctcacctacaacagcagcaa
tatcatcatcgggatcagcaaacggacgaggaatacaatcaaactcatcagggtaaacac
gttgcggtgcaatattcttcaggaactcctgctgctgaatcagaatcaccagaaattgca
aaggaaccacattcggcagaaaaatttagacgttctgtatccccttataggcggcctcct
gctcgtggaatctcaccttctcatagtacagccacattggcatcagaggcttcttcattt
tcgaggacaaattcttcgcgagatcagtaa
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