Lycium barbarum (goji berry): 132624986
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Entry
132624986 CDS
T09483
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03020
RNA polymerase
lbb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
132624986
09124 Replication and repair
03420 Nucleotide excision repair
132624986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbb03021
]
132624986
03400 DNA repair and recombination proteins [BR:
lbb03400
]
132624986
Enzymes [BR:
lbb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
132624986
Transcription machinery [BR:
lbb03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
132624986
DNA repair and recombination proteins [BR:
lbb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
132624986
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
132624986
NCBI-ProteinID:
XP_060195737
LinkDB
All DBs
Position
12:84860376..84868037
Genome browser
AA seq
1190 aa
AA seq
DB search
MDMEEEYEQDYNGEDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES
ADIEIRPESQHNPGHQPDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTY
SAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGE
CPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVGEVRSMAESQNRPPSTM
FVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQM
MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYC
ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRG
YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAST
LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA
YPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNT
EVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQTLQQRESPEEGGWHDLVA
KGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFP
DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA
GINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR
ASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSL
RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW
TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK
CGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG
RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKISFEC
RGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKQAKDQKKKGA
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggatatggaggaagagtatgagcaggattacaatggtgaggatgaagatgaaataaca
caagaggatgcttgggctgttattagtgcttattttgaagagaaaggactcgttcgtcaa
caacttgattcctttgatgagtttattcagaacactatgcaagaaattgttgatgaatct
gctgatattgagatccgacccgagtcccagcataacccgggtcatcaacctgactttgct
gagactatctacaaaatcaattttggtcagatttatttgagtaagccgatgatgacagag
tcagatggtgaaactgctaccttgtttccaaaggctgcgaggttgaggaatctgacatat
tctgcaccattgtatgtggatgttacaaagagagtcattaagaaagggcatgatggtgaa
gaagttactgaaactcaggacttcacaaaagtctttattggaaaggttcccattatgctt
cgctcaagttactgtacattatatcaaaattcagagaaggatctaacagagcttggagaa
tgtccattagatcaaggtggatattttattataaatggaagtgaaaaggtcctaattgct
caggagaagatgagcaccaaccatgtgtatgtgtttaagaagaggcaacctaacaagtat
gcgttcgttggagaagtcaggtcaatggcagaatctcaaaaccgcccaccgagtactatg
tttgtgcggatgctctcaaggactagtgcgaaagggggttcctcaggccaatacattcgg
gcgacacttccatatatccgaacagagattcctattattattgtgtttcgagcgctaggt
tttgtggctgataaggatatattggaacatatttgttatgatttcaatgatactcaaatg
atggagttgttacgtccatcgctggaagaagcttttgttatacaaaatcaacaggttgct
cttgactacatcgggaagagaggggctacagttggtgttacaagggaaaagaggataaag
tatgccaaagagattcttcagaaagaaatgcttcctcatgttggagttggagagtattgt
gaaacaaagaaagcttattactttgggtatatcatccaccggcttctgttatgtgcactt
ggccgaagggctgaggatgatagggatcattatggaaataagagactggatcttgctggt
cctttgcttggtggcctgtttcgaatgctctttagaaagttgacaagggatgttagaggc
tatgtgcaaaagtgtgttgacaatggaaaagatgtaaatcttcaatttgcaatcaaagct
aaaaccattaccagtgggctgaaatactctcttgctactggaaactgggggcaagctaat
gcagcgggtacgagagctggtgtttcacaggtgttgaatcgtctgacttatgcatctact
ttgtctcacttgcgaaggttgaattcccccataggacgagaagggaaactggccaaacca
aggcaattgcataattcacaatggggaatgatgtgtcctgcagaaacaccagagggtcaa
gcatgtgggctggtgaagaatctagctttaatggtttatataacagttggttcagcagca
tatccaattttggagtttctggaagagtggggtactgagaactttgaggaaatttctcct
gccgttattccacaggctacaaagatctttgtcaatggtacctgggtgggaattcatcgc
gatcctgacatgttggtgagaacattgagacgacttaggagaagggttgatgtcaatact
gaggtcggggtggttcgtgatatccgtttgaaagaacttcgtatttatacagactatggc
aggtgcagtcgtccattgtttattgtggaaaagcaaaggctgctgatcaagaagaaggat
attcaaacattgcaacaacgggaatcacctgaagagggtggctggcatgatctggtggct
aagggatacatcgagtacattgacactgaagaggaagaaacaacgatgattagcatgact
ataaatgatcttgtgcaagcacgccttaatcccggggatgcttattctgatacctatact
cactgcgaaattcacccatcactaatattgggtgtttgtgcatcaattattccgtttcct
gatcataaccagtctccccgtaatacttatcagtcagccatgggtaagcaagccatggga
atttatgtcaccaactaccaatttcggatggacacattggcctatgtgctttattatcct
cagaagcctcttgtcacaacacgagccatggaacacttgcatttcaggcaactacctgca
ggcatcaatgcaattgttgccatttcctgctattctggatacaatcaagaggattctgtc
attatgaatcagtcatctattgatcgtggattcttccgatcgctatttttccgttcatac
agggatgaggaaaagaagatggggacattggtcaaggaggactttggacgtcctgataga
gctagtactatgggtatgcggcatggttcttatgataagttggatgacgatggtcttgcc
cctccaggaactagagtttctggtgaggatgtgatcattgggaagacaactcccatttct
caagatgatgcacaagggcaagcatctcgctatacgaggaaagatcacagtaccagtctc
cgccatagtgaaactggaatggtagatcaggttctattaacaacaaatgccgacgggctc
cgatttgttaaagtgagggttagatcagtccgtattcctcaaattggggacaagttcagc
agtagacatggtcagaagggaacagttggcatgacatatacacaagaagatatgccatgg
accgtggaaggcattactcctgatattattgtgaatccccatgctattccttctcgaatg
actattggtcagttgattgaatgtattatggggaaggttgccgcacatatgggaaaagaa
ggtgatgccactccctttacagatgttactgtggataacatcagcaaagctctgcataaa
tgtggataccagatgcgtggttttgagaccatgtacaatggtcatactggacggcggctt
agtgctatgatattccttggtcccacgtactaccagcggctgaagcatatggttgatgac
aagattcattctagaggcagaggtccggtgcaaatcctcacaaggcagcccgcggaaggt
cggtcacgtgatggtggtcttcgttttggagagatggagcgagattgtatgattgctcac
ggtgccgctcattttctgaaagagcggttatttgaccaaagtgatgcatatagagttcat
gtttgtgagcgatgtgggctgattgctattgcaaacctcaagaagatttcttttgaatgc
cgaggatgcaagaacaagaccgatattgtccaggttcacattccatatgcgtgcaagttg
cttttccaggagcttatggccatggctatagctccaagaatgctcacaaaggatgtcaaa
caagccaaagatcaaaagaagaaaggagcatga
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integrated database retrieval system
